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[188679_s_at] ATPase

Description F52E1.10 /REP_DB=WormBase Gene ID /WP=CE04638 /TR=SW:Q20666 /GB=AAB37043.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=ATPase
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 97      4grp_highest_8_8 > 21      4grp_high_8_8 > 15      6grp_highest_nonorm > 94      6grp_total > 97      4grp_total > 08      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 185
1 2 3 4 range
A 74.2
(-2.9)
P 		71.8
(-3)
P 		151
(-0.1)
P 		233.5
(3)
P 		162
B 69.5
(-3)
P 		75.6
(-2.8)
P 		81.8
(-2.6)
P 		254.3
(3)
P 		185
C 71.3
(-3)
P 		74.1
(-2.9)
P 		116.7
(-0.7)
P 		192
(3)
P 		121
avr 71.7
(-3) 		73.8
(-2.9) 		116.5
(-1.3) 		226.6
(3) 		155

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1131
1 2 3 4 5 6 range
A 79.4
(-3)
P 		89.1
(-2.9)
P 		200.8
(-2.3)
P 		427.7
(-0.9)
P 		701.8
(0.7)
P 		1094.4
(3)
P 		1015
B 99.4
(-2.9)
P 		89.7
(-3)
P 		144.4
(-2.7)
P 		308.2
(-1.8)
P 		785
(0.7)
P 		1210.7
(3)
P 		1121
C 97.4
(-3)
P 		109.9
(-2.9)
P 		225.3
(-2.3)
P 		414
(-1.2)
P 		741.8
(0.6)
P 		1174.4
(3)
P 		1077
avr 92.1
(-3) 		96.2
(-3) 		190.2
(-2.4) 		383.3
(-1.4) 		742.9
(0.7) 		1159.8
(3) 		1068
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 27
(-0.1)
P 		15.6
(-3)
P 		39.5
(3)
P 		34.2
(1.7)
P 		24
B 22.2
(-2.4)
P 		18.7
(-3)
P 		18.9
(-3)
P 		54.2
(3)
P 		36
C 23.6
(-2.3)
P 		21.3
(-3)
P 		40.7
(3)
P 		32.4
(0.4)
P 		19
avr 24.3
(-1.4) 		18.5
(-3) 		33
(1) 		40.3
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 437
1 2 3 4 5 6 range
A 14.6
(-3)
P 		31.7
(-2.6)
P 		43.7
(-2.3)
P 		108.5
(-0.8)
P 		211.8
(1.7)
P 		266.4
(3)
P 		252
B 34.6
(-2.9)
P 		29.9
(-3)
P 		35.1
(-2.9)
P 		81.6
(-2.3)
P 		318.9
(1.1)
P 		451.5
(3)
P 		422
C 36.1
(-3)
P 		33.5
(-3)
P 		57.3
(-2.6)
P 		83.3
(-2.2)
P 		240.1
(0.4)
P 		393.1
(3)
P 		360
avr 28.4
(-3) 		31.7
(-2.9) 		45.4
(-2.7) 		91.1
(-1.9) 		256.9
(1) 		370.3
(3) 		342
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188679_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12158
Sequence Type Exemplar sequence
Representative Public ID F52E1.10 NCBI
Target Description F52E1.10 /REP_DB=WormBase Gene ID /WP=CE04638 /TR=SW:Q20666 /GB=AAB37043.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=ATPase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072770(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072770 NCBI Caenorhabditis elegans F52E1.10 (ATPase) mRNA, complete cds. 11/11 None
SNAP00000034427 ENSEMBL cdna:SNAP chromosome:CEL140:V:8414476:8416065:-1 11/11 None
GENEFINDER00000034443 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8414476:8416065:-1 11/11 None
F52E1.10 ENSEMBL cdna:known chromosome:CEL140:V:8414381:8416072:-1 gene:F52E1.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8414476-8416066(-) 100.0 100.0
Public Domain and Genome References
Gene Title ATPase
Ensembl F52E1.10
Entrez Gene 179223 Entrez gene
SwissProt Q20666 EMBL-EBI
WormBase CE04638 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
15986 ATP synthesis coupled proton transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16469 proton-transporting two-sector ATPase complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
46933 hydrogen-transporting ATP synthase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
46961 hydrogen-transporting ATPase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37043 Hypothetical protein F52E1.10 [Caenorhabditis elegans] ref|NP_505171.1| F52E1.10 [Caenorhabditis elegans] sp|Q20666|VATH1_CAEEL Probable vacuolar ATP synthase subunit H 1 (V-ATPase H subunit 1) (Vacuolar proton pump H subunit 1) (Vacuolar proton pump subunit SFD 1) 0.0
blast CAE66048 Hypothetical protein CBG11248 [Caenorhabditis briggsae] 0.0
blast AAA91266 Vacuolar h atpase protein 15 [Caenorhabditis elegans] ref|NP_508412.1| Vacuolar H ATPase family member (vha-15) [Caenorhabditis elegans] sp|Q22494|VATH2_CAEEL Probable vacuolar ATP synthase subunit H 2 (V-ATPase H subunit 2) (Vacuolar proton pump H subunit 2) (Vacuolar proton pump subunit SFD 2) 1.0E-111
Protein Domains
Database ID Description E-Value
Pfam IPR004908 EMBL-EBI V-ATPase subunit H 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:188679_S_AT
gtagtatccacactgcggaaccttatcacttcaaatcaggatgtttacatgaaaaagcaa
gctgctcttcaaatgattcaaaatcgtattccgactaaactggatcatctggagaatcga
aaatttactgatgtggaccttgtggaagatatggtatatctccagactgaactcaaaaaa
gttgtccaagtgctgacatctttcgatgaatacgaaaatgaactcagacagggatcactc
cattggtcgcctgctcacaaatgtgaagttttttggaatgagaatgctcacagacttaac
gataaccgacaggaacttctgaagcttttggtggctatgcttgagaagagtaacgatcca
ttagtgctctgtgtggctgctcatgatattggagagtttgtcagatattatccacgtggc
aaacttaaagtggaacaactcggtggtaaagaagcaatgatgcgtctgctgactgtgaag
gatccgaatgttcgctatcacgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAGTATCCACACTGCGGAACCTTA 476 455 805 Antisense
GCGGAACCTTATCACTTCAAATCAG 38 291 819 Antisense
GTCCAAGTGCTGACATCTTTCGATG 563 477 988 Antisense
AGACAGGGATCACTCCATTGGTCGC 588 69 1030 Antisense
TGGTCGCCTGCTCACAAATGTGAAG 263 551 1048 Antisense
GAGAATGCTCACAGACTTAACGATA 502 391 1084 Antisense
GGAACTTCTGAAGCTTTTGGTGGCT 347 527 1116 Antisense
GTAACGATCCATTAGTGCTCTGTGT 20 463 1154 Antisense
TGCTCTGTGTGGCTGCTCATGATAT 245 581 1169 Antisense
GCAATGATGCGTCTGCTGACTGTGA 534 321 1258 Antisense
GGATCCGAATGTTCGCTATCACGCT 342 513 1284 Antisense
Sequence Source Affymetrix Proprietary Database