[Home] | [Total List]

[188678_at] phophatase

Description C09H5.7 /REP_DB=WormBase Gene ID /WP=CE08049 /TR=O16334 /GB=AAB65386.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=phophatase
Cluster 6grp_total > 96      4grp_total > 27      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 30
(-1.4)
A 		63.3
(1.4)
A 		10.9
(-3)
A 		82.9
(3)
M 		72
B 23.1
(-3)
A 		66.4
(3)
A 		53.7
(1.2)
P 		35.2
(-1.3)
P 		43
C 56.5
(3)
A 		51.5
(2.1)
A 		24.1
(-3)
A 		54.6
(2.6)
A 		32
avr 36.5
(-1.7) 		60.4
(3) 		29.6
(-3) 		57.6
(2.5) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 33.8
(-1.2)
P 		4.2
(-3)
A 		20.7
(-2)
A 		73.3
(1.2)
P 		101.5
(2.9)
P 		103.5
(3)
P 		99
B 8
(-2.7)
A 		46.2
(-0.5)
A 		1.8
(-3)
A 		34.2
(-1.2)
A 		97.5
(2.4)
P 		109.1
(3)
P 		107
C 29
(-3)
A 		51
(-1.8)
P 		64.8
(-1.1)
A 		62.7
(-1.2)
M 		87.6
(0.2)
P 		140.3
(3)
P 		111
avr 23.6
(-3) 		33.8
(-2.3) 		29.1
(-2.6) 		56.7
(-0.9) 		95.5
(1.6) 		117.6
(3) 		94
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 10.9
(1.4)
A 		13.7
(3)
A 		2.9
(-3)
A 		12.1
(2.1)
M 		11
B 7.4
(-3)
A 		16.4
(3)
A 		12.4
(0.3)
P 		7.5
(-2.9)
P 		9
C 18.7
(3)
A 		14.8
(0.7)
A 		8.4
(-3)
A 		9.2
(-2.5)
A 		10
avr 12.3
(0.7) 		15
(3) 		7.9
(-3) 		9.6
(-1.6) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 6.2
(-2)
P 		1.5
(-3)
A 		4.5
(-2.4)
A 		18.6
(0.5)
P 		30.6
(3)
P 		25.2
(1.9)
P 		29
B 2.8
(-2.6)
A 		15.4
(-0.8)
A 		0.4
(-3)
A 		9.1
(-1.7)
A 		39.6
(2.8)
P 		40.7
(3)
P 		40
C 10.7
(-3)
A 		15.6
(-2.2)
P 		16.5
(-2)
A 		12.6
(-2.7)
M 		28.4
(-0.1)
P 		47
(3)
P 		36
avr 6.6
(-3) 		10.8
(-2.2) 		7.1
(-2.9) 		13.4
(-1.7) 		32.9
(2.1) 		37.6
(3) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188678_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11900
Sequence Type Exemplar sequence
Representative Public ID C09H5.7 NCBI
Target Description C09H5.7 /REP_DB=WormBase Gene ID /WP=CE08049 /TR=O16334 /GB=AAB65386.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=phophatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072685(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072685 NCBI Caenorhabditis elegans C09H5.7 (phophatase) mRNA, complete cds. 11/11 None
SNAP00000035875 ENSEMBL cdna:SNAP chromosome:CEL140:V:8086711:8087802:-1 11/11 None
GENEFINDER00000035883 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8082958:8087832:-1 10/11 None
C09H5.7 ENSEMBL cdna:known chromosome:CEL140:V:8086711:8087832:-1 gene:C09H5.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8086711-8087833(-) 100.0 100.0
Public Domain and Genome References
Gene Title phophatase
Ensembl C09H5.7
Entrez Gene 182476 Entrez gene
SwissProt O16334 EMBL-EBI
WormBase CE35227 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB65386 Hypothetical protein C09H5.7 [Caenorhabditis elegans] ref|NP_505086.2| C09H5.7 [Caenorhabditis elegans] 0.0
blast AAB65386 Hypothetical protein C09H5.7 [Caenorhabditis elegans] ref|NP_505086.2| C09H5.7 [Caenorhabditis elegans] 1.0E-175
blast AAB65391 Seven tm receptor protein 131 [Caenorhabditis elegans] ref|NP_505084.1| Seven TM Receptor family member (str-131) [Caenorhabditis elegans] 1.0E-167
blast CAE71230 Hypothetical protein CBG18099 [Caenorhabditis briggsae] 1.0E-160
blast CAE71230 Hypothetical protein CBG18099 [Caenorhabditis briggsae] 1.0E-156
blast AAO85519 putative serine/threonine phosphatase [Oesophagostomum dentatum] gb|AAO85518.1| putative serine/threonine phosphatase [Oesophagostomum dentatum] 1.0E-110
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 7.6E-39
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 7.6E-39
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 7.6E-39
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000035883 7 301-323,336-358,378-400,423-445,493-515,541-563,578-597
Sequence
Target Sequence 
>C. ELEGANS:188678_AT
gcttcgcggcaatcatgagtgtccagcagtgaaccgcgtctatggattctatgaagaatg
taacaaaagatatgctagcactcgtctttggttggctttccaagaagcttttgctgcgat
gccattcactgggctcatttcgggaagaattttgtgtatgcatggaggtctgtcgccgaa
gcttacaaatcttgatgtacttcgtgatttgactcgtccaatggatccaccaagtccttc
tcttcatattgatttgctatggagtgatccagataactcggtgatagattggcttccaaa
tgttcgtggagtctcctacatatttgggccaaatgttgtgaagaaacaaatcgagacgtt
gggaattgatttgatcgctcgtgctcatcaagtggttcaagatggttatgagttctttgc
ggagaagaagcttgtcacaatcttctccgctcctcactactgtggacaatttgataactc
ggctgctatcatgaacgttgatgataatcttatttgctcattccatgtgcttcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTCGCGGCAATCATGAGTGTCCA 131 307 489 Antisense
ATGAGTGTCCAGCAGTGAACCGCGT 32 41 503 Antisense
TAGCACTCGTCTTTGGTTGGCTTTC 549 651 564 Antisense
AGAAGCTTTTGCTGCGATGCCATTC 102 75 591 Antisense
GATGCCATTCACTGGGCTCATTTCG 460 415 606 Antisense
GTGTATGCATGGAGGTCTGTCGCCG 368 485 642 Antisense
TGTACTTCGTGATTTGACTCGTCCA 601 559 684 Antisense
GGAGTCTCCTACATATTTGGGCCAA 667 515 796 Antisense
GCTCGTGCTCATCAAGTGGTTCAAG 702 295 865 Antisense
ATAACTCGGCTGCTATCATGAACGT 708 23 962 Antisense
TTATTTGCTCATTCCATGTGCTTCG 563 679 998 Antisense
Sequence Source Affymetrix Proprietary Database