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[188677_s_at]

Description K06C4.12_rc /REP_DB=WormBase Gene ID /WP=CE10538 /GEN=his-22 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /REVCOMP /DEF=histone H2B
Cluster 6grp_total > 70      4grp_total > 28      6grp_cgc > 95      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 9.6
(-0.9)
A 		2.8
(-3)
A 		2.9
(-3)
A 		22.4
(3)
A 		20
B 34.7
(3)
A 		18.1
(-0.3)
A 		4.8
(-3)
A 		9
(-2.2)
A 		30
C 3.3
(-3)
A 		39
(3)
A 		23.2
(0.3)
A 		28.5
(1.2)
A 		36
avr 15.9
(0.5) 		20
(3) 		10.3
(-3) 		20
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 17.1
(2.2)
A 		9.9
(-1.2)
A 		17.3
(2.3)
A 		18.7
(3)
A 		6
(-3)
A 		15.3
(1.4)
A 		13
B 1.4
(-3)
A 		2.6
(-2.8)
A 		10.9
(-1.5)
A 		38.6
(3)
P 		12.7
(-1.2)
A 		21.3
(0.2)
A 		37
C 1.2
(-3)
A 		12.9
(-0.1)
A 		9.9
(-0.9)
A 		25.5
(3)
A 		3.7
(-2.4)
A 		9.4
(-1)
A 		24
avr 6.6
(-3) 		8.5
(-2.5) 		12.7
(-1.3) 		27.6
(3) 		7.5
(-2.7) 		15.3
(-0.5) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3.5
(3)
A 		0.6
(-3)
A 		0.7
(-2.8)
A 		3.3
(2.6)
A 		3
B 11.1
(3)
A 		4.5
(-1)
A 		1.1
(-3)
A 		1.9
(-2.5)
A 		10
C 1.1
(-3)
A 		11.2
(3)
A 		8.1
(1.2)
A 		4.8
(-0.8)
A 		10
avr 5.2
(2.4) 		5.4
(3) 		3.3
(-3) 		3.3
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 3.1
(-0.4)
A 		3.5
(0.4)
A 		3.8
(1)
A 		4.8
(3)
A 		1.8
(-3)
A 		3.7
(0.8)
A 		3
B 0.5
(-3)
A 		0.9
(-2.8)
A 		2.6
(-1.7)
A 		10.2
(3)
P 		5.2
(-0.1)
A 		7.9
(1.6)
A 		10
C 0.5
(-3)
A 		3.9
(1.4)
A 		2.5
(-0.4)
A 		5.1
(3)
A 		1.2
(-2.1)
A 		3.1
(0.4)
A 		5
avr 1.4
(-3) 		2.8
(-1.4) 		3
(-1.2) 		6.7
(3) 		2.7
(-1.5) 		4.9
(1) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188677_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28152
Sequence Type Exemplar sequence
Representative Public ID K06C4.12 NCBI
Target Description K06C4.12_rc /REP_DB=WormBase Gene ID /WP=CE10538 /GEN=his-22 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /REVCOMP /DEF=histone H2B
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) K06C4.12
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
K06C4.12 K06C4.12_rc /REP_DB=WormBase Gene ID /WP=CE10538 /GEN=his-22 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /REVCOMP /DEF=histone H2B A B 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_072877 11/11 Negative Strand Matching Probes A B 
NM_072893 11/11 Negative Strand Matching Probes A B 
NM_072796 10/11 Negative Strand Matching Probes A B 
NM_072894 11/11 Negative Strand Matching Probes A B 
NM_072878 11/11 Negative Strand Matching Probes A B 
SNAP00000015094 11/11 Negative Strand Matching Probes None
SNAP00000015095 11/11 Negative Strand Matching Probes None
GENEFINDER00000015150 11/11 Negative Strand Matching Probes None
GENEFINDER00000015153 11/11 Negative Strand Matching Probes None
SNAP00000018185 11/11 Negative Strand Matching Probes None
SNAP00000018186 11/11 Negative Strand Matching Probes None
GENEFINDER00000018201 11/11 Negative Strand Matching Probes None
GENEFINDER00000018208 11/11 Negative Strand Matching Probes None
SNAP00000030771 10/11 Negative Strand Matching Probes None
GENEFINDER00000030780 10/11 Negative Strand Matching Probes None
F45F2.12 10/11 Negative Strand Matching Probes A B 
F07B7.4 11/11 Negative Strand Matching Probes A B 
F07B7.11 11/11 Negative Strand Matching Probes A B 
K06C4.4 11/11 Negative Strand Matching Probes A B 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8897688-8898060(+) 100.0 100.0
chrV:8855593-8855965(+) 100.0 100.0
chrV:8535304-8535676(+) 99.46 99.46
chrV:16042726-16043098(+) 98.66 98.66
chrIV:8331031-8331397(+) 90.05 90.05
chrV:8895146-8895518(-) 100.0 100.0
chrV:8853051-8853423(-) 100.0 100.0
chrIV:8335962-8336328(-) 90.05 90.05
Public Domain and Genome References
Ensembl K06C4.12
Sequence
Target Sequence 
>C. ELEGANS:188677_S_AT
tgtacttggtgacagccttggttccctcagagacggcgtgcttggcaagctctcctggaa
gaatcaaacggacggcagtttgaatttcgcgagaagagatggtggatctcttgttgtagt
gagcaagacgagatgcctcagcagcgatacgctcgaagacgtcgttgacgaaagagttca
tgatggacatagccttggaagagactccagtgtctggatgaacctgcttgagcacacggt
agatgtacacggagtaggattctttacgggcatgacgtctcttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTACTTGGTGACAGCCTTGGTTCC 377 559 27 Antisense
GAGACGGCGTGCTTGGCAAGCTCTC 255 393 56 Antisense
CGGACGGCAGTTTGAATTTCGCGAG 337 243 95 Antisense
GATGGTGGATCTCTTGTTGTAGTGA 87 409 124 Antisense
AGACGAGATGCCTCAGCAGCGATAC 67 71 152 Antisense
GCAGCGATACGCTCGAAGACGTCGT 36 313 167 Antisense
GCCTTGGAAGAGACTCCAGTGTCTG 612 281 218 Antisense
GTGTCTGGATGAACCTGCTTGAGCA 295 487 236 Antisense
GAGCACACGGTAGATGTACACGGAG 396 387 256 Antisense
CACGGAGTAGGATTCTTTACGGGCA 519 199 274 Antisense
TCTTTACGGGCATGACGTCTCTTCT 552 613 287 Antisense
Sequence Source Affymetrix Proprietary Database