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[188676_at] translocase

Description F40F9.5 /REP_DB=WormBase Gene ID /WP=CE05854 /TR=Q20236 /GB=CAA94761.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=translocase
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 51      4grp_highest_8_8 > 36      4grp_high_8_8 > 08      6grp_highest_nonorm > 62      6grp_total > 51      4grp_total > 31      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 397.2
(3)
P 		266.3
(-3)
P 		323.2
(-0.4)
P 		349
(0.8)
P 		131
B 360.4
(3)
P 		304.2
(-1.5)
P 		284.9
(-3)
P 		360.5
(3)
P 		76
C 407.6
(3)
P 		326.9
(-3)
P 		394.5
(2)
P 		365.7
(-0.1)
P 		81
avr 388.4
(3) 		299.1
(-3) 		334.2
(-0.6) 		358.4
(1) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 385
1 2 3 4 5 6 range
A 382.2
(-0.9)
P 		391.8
(-0.7)
P 		621.3
(3)
P 		535.3
(1.6)
P 		429.7
(-0.1)
P 		253.1
(-3)
P 		368
B 442.1
(-0.1)
P 		429.5
(-0.4)
P 		599
(3)
P 		417.2
(-0.6)
P 		393.1
(-1.1)
P 		297.9
(-3)
P 		301
C 364.6
(-0.8)
P 		501.5
(1.5)
P 		496.1
(1.4)
P 		588.5
(3)
P 		425.9
(0.2)
P 		236.5
(-3)
P 		352
avr 396.3
(-0.4) 		440.9
(0.5) 		572.1
(3) 		513.7
(1.9) 		416.2
(-0) 		262.5
(-3) 		310
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 144.6
(3)
P 		57.8
(-2.6)
P 		84.5
(-0.9)
P 		51.1
(-3)
P 		94
B 114.9
(3)
P 		75.1
(-1.9)
P 		66
(-3)
P 		76.8
(-1.7)
P 		49
C 134.9
(2.8)
P 		94
(-0.4)
P 		137.5
(3)
P 		61.7
(-3)
P 		76
avr 131.5
(3) 		75.6
(-1.9) 		96
(-0.1) 		63.2
(-3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 70.5
(-2.3)
P 		139.3
(3)
P 		135.3
(2.7)
P 		135.8
(2.7)
P 		129.7
(2.3)
P 		61.6
(-3)
P 		78
B 153.8
(2.3)
P 		143
(1)
P 		145.5
(1.3)
P 		110.5
(-3)
P 		159.7
(3)
P 		111.1
(-2.9)
P 		49
C 135.1
(1.5)
P 		153
(3)
P 		126.3
(0.8)
P 		118.3
(0.2)
P 		137.8
(1.8)
P 		79.2
(-3)
P 		74
avr 119.8
(0.5) 		145.1
(3) 		135.7
(2.1) 		121.5
(0.7) 		142.4
(2.7) 		84
(-3) 		61
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188676_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11594
Sequence Type Exemplar sequence
Representative Public ID F40F9.5 NCBI
Target Description F40F9.5 /REP_DB=WormBase Gene ID /WP=CE05854 /TR=Q20236 /GB=CAA94761.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=translocase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073105(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073105 NCBI Caenorhabditis elegans F40F9.5 (translocase) mRNA, complete cds. 11/11 None
SNAP00000009255 ENSEMBL cdna:SNAP chromosome:CEL140:V:9722497:9725194:-1 11/11 None
GENEFINDER00000009265 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9722497:9726542:-1 11/11 None
F40F9.5 ENSEMBL cdna:known chromosome:CEL140:V:9722352:9726542:-1 gene:F40F9.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9722496-9724609(-) 100.0 100.0
Public Domain and Genome References
Gene Title translocase
Ensembl F40F9.5
Entrez Gene 185544 Entrez gene
SwissProt Q20236 EMBL-EBI
WormBase CE37834 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94761 Hypothetical protein F40F9.5 [Caenorhabditis elegans] ref|NP_505506.2| F40F9.5 [Caenorhabditis elegans] 0.0
blast CAE72240 Hypothetical protein CBG19357 [Caenorhabditis briggsae] 0.0
blast XP_786719 PREDICTED: similar to CG15890-PA [Strongylocentrotus purpuratus] 3.0E-9
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505506.2 11 65-87,160-182,192-214,235-257,272-291,350-372,392-414,419-438,443-465,478-500,510-532
F40F9.5 11 65-87,160-182,192-214,235-257,272-291,350-372,392-414,419-438,443-465,478-500,510-532
SNAP00000009255 11 42-64,137-159,169-191,212-234,249-268,327-349,369-391,396-415,420-442,455-477,487-509
GENEFINDER00000009265 11 65-87,160-182,192-214,235-257,272-291,350-372,392-414,419-438,443-465,478-500,510-532
Sequence
Target Sequence 
>C. ELEGANS:188676_AT
ctatgtccaattcttctaactttctctcattggcttggcaaggattctcttttgattatt
gcagctctcgcatgctcagcagccacatcattccttacagcatttgctacacgaactgaa
catatcttctatacatgcatttttggcatagtaatgggtggtatgcagcctgcgtatcgt
tcatttttgccaagaatggttgccaaagaagagacggctcgattactgactgttgtctca
attattatttcattctcaccaattttgtcatcactgatattcaacaacattttcaacatg
acacttacttggtggccgggatttgcgtttttcgtgtcaggatgcttccagattactgtt
tttatagggcaattagtgatccatatgctaatgcgtccacaatggaaacttgataaacag
ctccgtactcgacgtgaagaagaaactgactcccgagatgaacctgaatttcgtccaatc
g

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTATGTCCAATTCTTCTAACTTTCT 48 225 1081 Antisense
AACTTTCTCTCATTGGCTTGGCAAG 364 139 1098 Antisense
TGATTATTGCAGCTCTCGCATGCTC 180 565 1133 Antisense
CCACATCATTCCTTACAGCATTTGC 509 275 1163 Antisense
TAATGGGTGGTATGCAGCCTGCGTA 243 635 1232 Antisense
AGCCTGCGTATCGTTCATTTTTGCC 698 81 1247 Antisense
AGACGGCTCGATTACTGACTGTTGT 500 71 1292 Antisense
GGGATTTGCGTTTTTCGTGTCAGGA 275 497 1398 Antisense
GATCCATATGCTAATGCGTCCACAA 613 415 1458 Antisense
TAAACAGCTCCGTACTCGACGTGAA 13 641 1494 Antisense
GATGAACCTGAATTTCGTCCAATCG 611 409 1537 Antisense
Sequence Source Affymetrix Proprietary Database