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[188673_s_at]

Description C42C1.11 /REP_DB=WormBase Gene ID /WP=CE24840 /TR=O44969 /GB=AAB97552.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=peptidase
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 84      4grp_highest_8_8 > 15      4grp_high_8_8 > 06      6grp_highest_nonorm > 97      6grp_total > 75      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1107
1 2 3 4 range
A 708.4
(-2.8)
P 		712.6
(-2.8)
P 		683.7
(-3)
P 		1409.3
(3)
P 		726
B 663.5
(-2.7)
P 		628.7
(-3)
P 		728.3
(-2.1)
P 		1266
(3)
P 		637
C 516
(-3)
P 		675.4
(-2.1)
P 		543.7
(-2.8)
P 		1623.2
(3)
P 		1107
avr 629.3
(-3) 		672.2
(-2.7) 		651.9
(-2.8) 		1432.8
(3) 		804

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 991
1 2 3 4 5 6 range
A 839.6
(-1)
P 		557
(-3)
P 		874.1
(-0.7)
P 		1086.1
(0.8)
P 		958.2
(-0.1)
P 		1387.6
(3)
P 		831
B 583.3
(-3)
P 		579.3
(-3)
P 		1122.3
(1)
P 		1069
(0.6)
P 		899.8
(-0.7)
P 		1398.7
(3)
P 		819
C 464.7
(-3)
P 		616.2
(-2.1)
P 		1032.3
(0.4)
P 		1098.4
(0.8)
P 		819.6
(-0.9)
P 		1455.4
(3)
P 		991
avr 629.2
(-2.7) 		584.2
(-3) 		1009.6
(0.1) 		1084.5
(0.6) 		892.5
(-0.8) 		1413.9
(3) 		830
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 257.9
(3)
P 		154.7
(-3)
P 		178.7
(-1.6)
P 		206.3
(0)
P 		103
B 211.6
(-0)
P 		155.3
(-3)
P 		168.8
(-2.3)
P 		269.8
(3)
P 		115
C 170.8
(-3)
P 		194.2
(-1.6)
P 		189.5
(-1.9)
P 		273.7
(3)
P 		103
avr 213.4
(0.3) 		168.1
(-3) 		179
(-2.2) 		249.9
(3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 367
1 2 3 4 5 6 range
A 154.8
(-3)
P 		198.1
(-1.6)
P 		190.4
(-1.8)
P 		275.5
(1)
P 		289.1
(1.4)
P 		337.8
(3)
P 		183
B 203
(-2.8)
P 		192.8
(-3)
P 		272.5
(-1.5)
P 		283.1
(-1.4)
P 		365.6
(0.2)
P 		521.6
(3)
P 		329
C 172.3
(-3)
P 		188
(-2.7)
P 		262.7
(-1.3)
P 		220.9
(-2.1)
P 		265.2
(-1.2)
P 		487.2
(3)
P 		315
avr 176.7
(-3) 		193
(-2.6) 		241.9
(-1.6) 		259.8
(-1.2) 		306.6
(-0.1) 		448.9
(3) 		272
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188673_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9731
Sequence Type Exemplar sequence
Representative Public ID C42C1.11 NCBI
Target Description C42C1.11 /REP_DB=WormBase Gene ID /WP=CE24840 /TR=O44969 /GB=AAB97552.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=peptidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027885(11), NM_001027887(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027885 NCBI Caenorhabditis elegans C42C1.11a (peptidase) mRNA, complete cds. 11/11 None
NM_001027887 NCBI Caenorhabditis elegans C42C1.11c (peptidase) mRNA, complete cds. 11/11 None
SNAP00000027938 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12279634:12281605:1 11/11 None
GENEFINDER00000027954 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12279634:12281605:1 11/11 None
C42C1.11a.2 ENSEMBL cdna:known chromosome:CEL140:IV:12279629:12281884:1 gene:C42C1.11 11/11 None
C42C1.11c.2 ENSEMBL cdna:known chromosome:CEL140:IV:12279630:12281699:1 gene:C42C1.11 11/11 None
C42C1.11c.1 ENSEMBL cdna:known chromosome:CEL140:IV:12279631:12281888:1 gene:C42C1.11 11/11 None
C42C1.11a.1 ENSEMBL cdna:known chromosome:CEL140:IV:12279631:12281605:1 gene:C42C1.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178176 3 2 NM_001027885 175698_at (11), 188673_s_at (11)
NM_001027887 175698_at (11), 188673_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12279639-12281611(+) 100.0 100.0
Public Domain and Genome References
Ensembl C42C1.11
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001023056 C42C1.11a [Caenorhabditis elegans] gb|AAB97552.2| Hypothetical protein C42C1.11a [Caenorhabditis elegans] gb|AAC72891.1| aminopeptidase-1 [Caenorhabditis elegans] gb|AAC70927.1| aminopeptidase-1 [Caenorhabditis elegans] 0.0
blast NP_001023058 C42C1.11c [Caenorhabditis elegans] gb|AAO61434.1| Hypothetical protein C42C1.11c [Caenorhabditis elegans] 0.0
blast CAE62217 Hypothetical protein CBG06268 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001930 EMBL-EBI Peptidase M1, membrane alanine aminopeptidase 1.0E-126
Pfam IPR001930 EMBL-EBI Peptidase M1, membrane alanine aminopeptidase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:188673_S_AT
atgcctataaaactgtctctactgaagagtggaaagagtatctctatgattcattcactg
ataagaaggttattctggacaatattgactggaatttgtggcttcacaaagccggacttc
caccaaagccaaaatatgactcaactccgatgcaagcttgcaaggatcttgccgctaaat
ggactacagaaggatccgaggcaccaactgacggagaagtcttcgcaaagatgtctaatt
ctcaaaagcttgctgttctcgatgcagttcgtgtgaacaagactatgtttggagatcgaa
tgcctgcgttgacagccacctataaactggatcaggctaaaaatgcagagctaaaattct
catggctgatgcttggtctcgaaacgaagtggtctccgattgttgatgcaagtctagcgt
tcgcgttggctgttggtagaatgaagtattgcaaaccaatttacagatctttgttcggat
ggagtgcaacacgtgatcgagccatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCCTATAAAACTGTCTCTACTGA 295 41 1265 Antisense
GTGGCTTCACAAAGCCGGACTTCCA 618 491 1362 Antisense
TATGACTCAACTCCGATGCAAGCTT 381 657 1399 Antisense
GGATCCGAGGCACCAACTGACGGAG 323 511 1456 Antisense
AAGCTTGCTGTTCTCGATGCAGTTC 436 151 1510 Antisense
GGAGATCGAATGCCTGCGTTGACAG 306 519 1555 Antisense
GCGTTGACAGCCACCTATAAACTGG 267 289 1570 Antisense
TGGCTGATGCTTGGTCTCGAAACGA 195 543 1627 Antisense
GAAGTGGTCTCCGATTGTTGATGCA 219 335 1650 Antisense
GCAAGTCTAGCGTTCGCGTTGGCTG 277 321 1672 Antisense
GAGTGCAACACGTGATCGAGCCATC 407 401 1746 Antisense
Sequence Source Affymetrix Proprietary Database