[Home] | [Total List]

[188672_at]

Description K02E2.2 /REP_DB=WormBase Gene ID /WP=CE18837 /TR=Q9XUV2 /GB=CAB04547.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Hint module
Cluster 6grp_total > 03      4grp_total > 50      6grp_cgc > 40      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 32.2
(3)
A 		9.9
(-2.2)
A 		10.9
(-2)
A 		6.7
(-3)
A 		26
B 8.3
(-3)
A 		57.9
(3)
A 		8.5
(-3)
A 		12.6
(-2.5)
A 		50
C 10.9
(-3)
A 		31.8
(-0.4)
A 		58.8
(3)
A 		16.9
(-2.2)
A 		48
avr 17.1
(-1.6) 		33.2
(3) 		26.1
(1) 		12.1
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 15.4
(1.9)
A 		9.3
(-1.9)
A 		7.6
(-3)
A 		15.3
(1.8)
A 		17.2
(3)
A 		11.1
(-0.8)
A 		10
B 12.4
(-1.6)
A 		42
(3)
A 		3.3
(-3)
A 		26.4
(0.6)
A 		5.6
(-2.6)
A 		10.3
(-1.9)
A 		39
C 24.4
(3)
A 		17.5
(1)
A 		13.3
(-0.2)
A 		11.3
(-0.7)
A 		3.4
(-3)
A 		3.9
(-2.9)
A 		21
avr 17.4
(0.8) 		22.9
(3) 		8.1
(-3) 		17.7
(0.9) 		8.7
(-2.8) 		8.4
(-2.9) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 11.7
(3)
A 		2.2
(-2.3)
A 		2.8
(-2)
A 		1
(-3)
A 		11
B 2.6
(-2.7)
A 		14.3
(3)
A 		2
(-3)
A 		2.7
(-2.7)
A 		12
C 3.6
(-2.7)
A 		9.1
(-0.9)
A 		20.5
(3)
A 		2.8
(-3)
A 		18
avr 6
(0.6) 		8.5
(3) 		8.4
(2.9) 		2.2
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 2.8
(-1)
A 		3.3
(-0.2)
A 		1.6
(-3)
A 		3.9
(0.8)
A 		5.2
(3)
A 		2.7
(-1.2)
A 		4
B 4.3
(-1.4)
A 		14
(3)
A 		0.8
(-3)
A 		7
(-0.2)
A 		2.3
(-2.3)
A 		3.8
(-1.6)
A 		13
C 9
(3)
A 		5.3
(0.2)
A 		3.4
(-1.3)
A 		2.3
(-2.1)
A 		1.1
(-3)
A 		1.3
(-2.8)
A 		8
avr 5.4
(0.8) 		7.5
(3) 		1.9
(-3) 		4.4
(-0.3) 		2.9
(-1.9) 		2.6
(-2.3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188672_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13704
Sequence Type Exemplar sequence
Representative Public ID K02E2.2 NCBI
Target Description K02E2.2 /REP_DB=WormBase Gene ID /WP=CE18837 /TR=Q9XUV2 /GB=CAB04547.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Hint module
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075522(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075522 NCBI Caenorhabditis elegans GRounDhog (hedgehog-like family) family member (grd-11) (grd-11) mRNA, complete cds. 11/11 None
GENEFINDER00000027382 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20353231:20363644:1 10/11 None
K02E2.2 ENSEMBL cdna:known chromosome:CEL140:V:20354968:20363769:1 gene:K02E2.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027374 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20354967-20363769(+) 96.58 100.0
Public Domain and Genome References
Gene Title
Gene Symbol grd-11
Ensembl K02E2.2
Entrez Gene 186880 Entrez gene
SwissProt Q9XUV2 EMBL-EBI
WormBase CE18837 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
7154 cell communication inferred from electronic annotation QuickGO AmiGO
7275 development inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8233 peptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04547 Hypothetical protein K02E2.2 [Caenorhabditis elegans] ref|NP_507923.1| GRounDhog (hedgehog-like family) family member (grd-11) [Caenorhabditis elegans] 0.0
blast CAA92000 Hypothetical protein R08B4.1a [Caenorhabditis elegans] ref|NP_001024843.1| R08B4.1a [Caenorhabditis elegans] 0.0
blast CAD91696 Hypothetical protein R08B4.1b [Caenorhabditis elegans] ref|NP_001024844.1| R08B4.1b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 4.7E-22
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 7.7E-33
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 2.0E-31
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 3.0E-9
Pfam IPR001767 EMBL-EBI Peptidase C46, hedgehog protein, hint region 5.2E-63
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 4.7E-22
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 7.7E-33
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 2.0E-31
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 3.0E-9
Pfam IPR001767 EMBL-EBI Peptidase C46, hedgehog protein, hint region 2.9E-61
Sequence
Target Sequence 
>C. ELEGANS:188672_AT
ttgactgctgatctgaaaaccgccctcttctcggcaatcactttgtggatccatcgagag
ccggagacagtgcaagagtttctggaaattaaaacggacaacgggaagactcttcagctg
acggccggtcattttatctatgcgactgaatgtagatacctacctagtaaaaactcatca
ttgctgaattcaactccagaacgttatcgccacctaatcgataccttgcccgacgactcg
gaaaccaaactagcttctcaactgaaaatcggagagtgtttgctaattcacaatggggat
caattccgcatgcagaaaatcgatagtatctcaaaaactgtgagcacagggatatactcc
ccactgacagagaatggaaggatccttgtgaacgatgtgctggcttcctgctacagtgag
gtgcagcagaatgtgctgcagaccacatttttctgggcctttgatcgtttgcgaaatttg
atagtgcaatattttggagatctctacttggacgagattgaacttccaactggaacgtcg
ctgtacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGACTGCTGATCTGAAAACCGCCC 320 703 2494 Antisense
GTGGATCCATCGAGAGCCGGAGACA 106 491 2538 Antisense
CGGCCGGTCATTTTATCTATGCGAC 403 241 2615 Antisense
CAGAACGTTATCGCCACCTAATCGA 238 203 2690 Antisense
AAACCAAACTAGCTTCTCAACTGAA 483 121 2735 Antisense
GCACAGGGATATACTCCCCACTGAC 654 315 2837 Antisense
CTTGTGAACGATGTGCTGGCTTCCT 510 217 2878 Antisense
CTGGCTTCCTGCTACAGTGAGGTGC 133 241 2893 Antisense
GCTGCAGACCACATTTTTCTGGGCC 141 297 2928 Antisense
TTTCTGGGCCTTTGATCGTTTGCGA 364 671 2943 Antisense
TTCCAACTGGAACGTCGCTGTACAA 644 699 3017 Antisense
Sequence Source Affymetrix Proprietary Database