[Home] | [Total List]

[188671_at] hlh transcription factor

Description T14F9.5 /REP_DB=WormBase Gene ID /WP=CE07501 /GEN=lin-32 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=hlh transcription factor
Cluster 6grp_total > 47      4grp_total > 43      6grp_cgc > 16      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 47.3
(-3)
A 		87.6
(3)
A 		66.4
(-0.2)
A 		62.9
(-0.7)
A 		40
B 24.7
(-0.4)
A 		48.1
(3)
A 		37.5
(1.5)
A 		6.5
(-3)
A 		42
C 46.5
(0.6)
P 		63.2
(3)
P 		21.6
(-3)
A 		45.7
(0.5)
A 		42
avr 39.5
(-2.8) 		66.3
(3) 		41.8
(-2.3) 		38.4
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 85
(3)
A 		23.1
(-1.6)
A 		24.8
(-1.4)
A 		19.2
(-1.9)
A 		3.8
(-3)
A 		40.1
(-0.3)
A 		81
B 38.8
(0.4)
A 		37.9
(0.3)
P 		23.3
(-1.6)
A 		31.3
(-0.6)
A 		13.1
(-3)
A 		58.3
(3)
M 		45
C 28.8
(-0.2)
A 		58.2
(3)
A 		37.3
(0.8)
A 		2.2
(-3)
A 		37.4
(0.8)
A 		47.6
(1.9)
P 		56
avr 50.9
(3) 		39.7
(1) 		28.5
(-1) 		17.6
(-3) 		18.1
(-2.9) 		48.7
(2.6) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 17.2
(1.9)
A 		19
(3)
A 		17.4
(2)
A 		9.2
(-3)
A 		10
B 7.9
(0.7)
A 		11.9
(3)
A 		8.7
(1.2)
A 		1.4
(-3)
A 		11
C 15.4
(1.4)
P 		18.2
(3)
P 		7.5
(-3)
A 		7.7
(-2.9)
A 		11
avr 13.5
(1.3) 		16.4
(3) 		11.2
(-0) 		6.1
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 15.7
(3)
A 		8.2
(-0.1)
A 		5.4
(-1.2)
A 		4.9
(-1.4)
A 		1.1
(-3)
A 		9.8
(0.6)
A 		15
B 13.5
(0)
A 		12.6
(-0.3)
P 		5.7
(-2.9)
A 		8.3
(-1.9)
A 		5.3
(-3)
A 		21.7
(3)
M 		16
C 10.7
(0.6)
A 		17.8
(3)
A 		9.5
(0.1)
A 		0.4
(-3)
A 		12.1
(1)
A 		15.9
(2.3)
P 		17
avr 13.3
(1.7) 		12.9
(1.5) 		6.9
(-1.7) 		4.5
(-3) 		6.2
(-2.1) 		15.8
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188671_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18465
Sequence Type Exemplar sequence
Representative Public ID T14F9.5 NCBI
Target Description T14F9.5 /REP_DB=WormBase Gene ID /WP=CE07501 /GEN=lin-32 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=hlh transcription factor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076009(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076009 NCBI Caenorhabditis elegans abnormal cell LINeage family member (lin-32) (lin-32) mRNA, complete cds. 11/11 None
SNAP00000024569 ENSEMBL cdna:SNAP chromosome:CEL140:X:2229200:2230077:-1 11/11 None
GENEFINDER00000024572 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2229200:2234202:-1 11/11 None
T14F9.5 ENSEMBL cdna:known chromosome:CEL140:X:2229200:2230077:-1 gene:T14F9.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2229199-2229799(-) 100.0 100.0
Public Domain and Genome References
Gene Title hlh transcription factor
Gene Symbol lin-32
Ensembl T14F9.5
Entrez Gene 191703 Entrez gene
SwissProt Q10574 EMBL-EBI
WormBase CE33318 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA91264 Abnormal cell lineage protein 32 [Caenorhabditis elegans] ref|NP_508410.2| abnormal cell LINeage family member (lin-32) [Caenorhabditis elegans] sp|Q10574|LIN32_CAEEL Abnormal cell lineage protein 7.0E-61
blast AAA91264 Abnormal cell lineage protein 32 [Caenorhabditis elegans] ref|NP_508410.2| abnormal cell LINeage family member (lin-32) [Caenorhabditis elegans] sp|Q10574|LIN32_CAEEL Abnormal cell lineage protein 2.0E-60
blast AAA67360 LIN-32 prf||2102353A transcription factor LIN-32 4.0E-24
blast AAA67360 LIN-32 prf||2102353A transcription factor LIN-32 1.0E-23
blast CAE68336 Hypothetical protein CBG14057 [Caenorhabditis briggsae] 6.0E-20
Protein Domains
Database ID Description E-Value
Pfam IPR001092 EMBL-EBI Basic helix-loop-helix dimerization domain bHLH 2.2E-21
Pfam IPR001092 EMBL-EBI Basic helix-loop-helix dimerization domain bHLH 2.2E-21
Sequence
Target Sequence 
>C. ELEGANS:188671_AT
gtgctgcaaatgaacgggagcgccgaagaatgaacacgctgaatgttgcctatgacgagc
ttcgcgaggttcttcctgaaatcgactcggggaagaagttgtccaaattcgaaacattgc
aaatggctcagaagtatattgaatgcctgtcgcagattttgaagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCTGCAAATGAACGGGAGCGCCG 703 475 23 Antisense
ACGGGAGCGCCGAAGAATGAACACG 127 95 36 Antisense
CACGCTGAATGTTGCCTATGACGAG 710 135 57 Antisense
GCCTATGACGAGCTTCGCGAGGTTC 99 283 70 Antisense
GCTTCGCGAGGTTCTTCCTGAAATC 325 305 81 Antisense
GTTCTTCCTGAAATCGACTCGGGGA 79 445 91 Antisense
TCGACTCGGGGAAGAAGTTGTCCAA 534 597 104 Antisense
AAGTTGTCCAAATTCGAAACATTGC 18 157 118 Antisense
GAAACATTGCAAATGGCTCAGAAGT 161 357 133 Antisense
GAAGTATATTGAATGCCTGTCGCAG 200 337 153 Antisense
GAATGCCTGTCGCAGATTTTGAAGC 292 331 163 Antisense
Sequence Source Affymetrix Proprietary Database