[Home] | [Total List]

[188668_at] protease

Description C49D10.10 /REP_DB=WormBase Gene ID /WP=CE08851 /TR=O16607 /GB=AAC71183.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=protease
Cluster 6grp_total > 50      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 3.4
(-3)
A 		17.9
(-0.6)
A 		39.7
(3)
A 		32.8
(1.9)
A 		36
B 27.2
(3)
A 		3.3
(-2.7)
A 		3.3
(-2.7)
A 		1.9
(-3)
A 		25
C 6.5
(-2.7)
A 		5
(-3)
A 		27.9
(1)
A 		39.7
(3)
A 		35
avr 12.4
(-1.6) 		8.7
(-3) 		23.6
(2.6) 		24.8
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 9.5
(-1.1)
A 		12.7
(-0.3)
A 		1.6
(-3)
A 		26.3
(3)
A 		3.2
(-2.6)
A 		4.5
(-2.3)
A 		25
B 7
(-1.9)
A 		5.8
(-2.6)
A 		5
(-3)
A 		16.2
(3)
A 		5.2
(-2.9)
A 		8.5
(-1.1)
A 		11
C 26.8
(1.4)
A 		16.9
(-0.4)
A 		35.7
(3)
A 		3.7
(-2.9)
A 		11.4
(-1.4)
A 		2.9
(-3)
A 		33
avr 14.4
(2.4) 		11.8
(0.9) 		14.1
(2.2) 		15.4
(3) 		6.6
(-2.2) 		5.3
(-3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.2
(-3)
A 		3.9
(-1.2)
A 		10.4
(3)
A 		4.8
(-0.7)
A 		9
B 8.7
(3)
A 		0.8
(-2.7)
A 		0.8
(-2.7)
A 		0.4
(-3)
A 		8
C 2.1
(-2.6)
A 		1.5
(-3)
A 		9.7
(3)
A 		6.7
(0.8)
A 		8
avr 4
(-0.7) 		2.1
(-3) 		7
(3) 		4
(-0.7) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.8
(-1.6)
A 		4.5
(0.9)
A 		0.3
(-3)
A 		6.7
(3)
A 		1
(-2.3)
A 		1.1
(-2.3)
A 		6
B 2.4
(-0.7)
A 		1.9
(-1.6)
A 		1.2
(-3)
A 		4.3
(3)
A 		2.1
(-1.3)
A 		3.2
(0.9)
A 		3
C 9.9
(3)
A 		5.2
(-0.1)
A 		9.1
(2.5)
A 		0.7
(-3)
A 		3.7
(-1)
A 		1
(-2.8)
A 		9
avr 4.7
(3) 		3.9
(1.3) 		3.5
(0.5) 		3.9
(1.3) 		2.3
(-2) 		1.8
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188668_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5233
Sequence Type Exemplar sequence
Representative Public ID C49D10.10 NCBI
Target Description C49D10.10 /REP_DB=WormBase Gene ID /WP=CE08851 /TR=O16607 /GB=AAC71183.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=protease
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062278(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062278 NCBI Caenorhabditis elegans C49D10.10 (protease) mRNA, complete cds. 11/11 None
SNAP00000008442 ENSEMBL cdna:SNAP chromosome:CEL140:II:3873534:3875564:-1 11/11 None
GENEFINDER00000008450 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3873335:3877130:-1 11/11 None
C49D10.10 ENSEMBL cdna:known chromosome:CEL140:II:3873534:3877220:-1 gene:C49D10.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3873469-3877888(-) 98.21 100.0
Public Domain and Genome References
Gene Title protease
Ensembl C49D10.10
Entrez Gene 173730 Entrez gene
SwissProt O16607 EMBL-EBI
WormBase CE29229 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4245 neprilysin activity inferred from electronic annotation QuickGO AmiGO
8237 metallopeptidase activity inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAL02468 Hypothetical protein C49D10.10 [Caenorhabditis elegans] ref|NP_494679.1| C49D10.10 [Caenorhabditis elegans] 0.0
blast T31991 hypothetical protein C49D10.10 - Caenorhabditis elegans 0.0
blast AAB66080 Hypothetical protein F18A12.1 [Caenorhabditis elegans] ref|NP_494537.1| F18A12.1 [Caenorhabditis elegans] 1.0E-168
Protein Domains
Database ID Description E-Value
Pfam IPR008753 EMBL-EBI Peptidase M13 1.4E-6
Pfam IPR000718 EMBL-EBI Peptidase M13, neprilysin 2.1E-105
Pfam IPR008753 EMBL-EBI Peptidase M13 9.1E-9
Pfam IPR008753 EMBL-EBI Peptidase M13 1.4E-6
Pfam IPR000718 EMBL-EBI Peptidase M13, neprilysin 1.2E-101
Pfam IPR000718 EMBL-EBI Peptidase M13, neprilysin 2.1E-105
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494679.1 1 12-31
C49D10.10 1 12-31
GENEFINDER00000008450 1 12-31
Sequence
Target Sequence 
>C. ELEGANS:188668_AT
actttttggcaattctcgctccagtcctagatgatccaattttcgacacaacttttccac
gctacgtgaatctggctgtaatcgggaatgtgttggcacacgagatcggccacgcgtttg
atcacaccgggataaactatgatgatgctggccaacaacggatatggctcacaccggaag
attcagaagagtatggaaagaggctccgatgcttgttgaggcaacacgacgaatatgatg
atccggattttgggaggaatctgaacggatcaaaaacccttcacgaaatctcggctgaca
gatttggagttgaagccgcctggagaacattcaaaaagttggacttgtcaaacgagtctg
aaattgtaggatttcagaactttaatattgatcagctctatttcagaacggcagctctga
tctggtgccgacagcgtgacaccacagatttgcagtacgcattacaacgagaacacccaa
cgaacaattttcgtgtgaacgggatttatgcaaatatgccgcaatttgcggagacattca
attgcccgttaggatcgccta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTTTTGGCAATTCTCGCTCCAGT 208 103 1808 Antisense
CAATTTTCGACACAACTTTTCCACG 625 177 1844 Antisense
TCCACGCTACGTGAATCTGGCTGTA 179 589 1863 Antisense
TGTTGGCACACGAGATCGGCCACGC 531 561 1898 Antisense
GATATGGCTCACACCGGAAGATTCA 697 423 1968 Antisense
AAGAGGCTCCGATGCTTGTTGAGGC 262 153 2005 Antisense
AAACCCTTCACGAAATCTCGGCTGA 66 125 2081 Antisense
AGAACGGCAGCTCTGATCTGGTGCC 399 73 2212 Antisense
TCTGGTGCCGACAGCGTGACACCAC 152 609 2228 Antisense
GTGACACCACAGATTTGCAGTACGC 300 483 2243 Antisense
TTCAATTGCCCGTTAGGATCGCCTA 306 683 2344 Antisense
Sequence Source Affymetrix Proprietary Database