[Home] | [Total List]

[188667_at]

Description B0302.6 /REP_DB=WormBase Gene ID /WP=CE03871 /GB=AAK68673.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=reverse transcriptase
Cluster 6grp_high1_10_10 > 12      6grp_total > 44      4grp_total > 11      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 183
1 2 3 4 range
A 132.2
(-1.7)
M 		145.7
(-1.2)
P 		97.9
(-3)
A 		258.6
(3)
P 		161
B 139.4
(3)
P 		109.3
(-1.6)
A 		99.9
(-3)
A 		105.9
(-2.1)
M 		40
C 93.9
(-2.3)
A 		105.8
(-1.8)
A 		75.5
(-3)
A 		226.2
(3)
P 		151
avr 121.8
(-1.3) 		120.3
(-1.3) 		91.1
(-3) 		196.9
(3) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 155.1
(3)
P 		83.7
(-0.9)
A 		148.6
(2.6)
P 		43.9
(-3)
A 		119.7
(1.1)
P 		106.5
(0.4)
P 		111
B 94.4
(-1.1)
A 		130.4
(0.9)
A 		165.8
(3)
A 		86.6
(-1.6)
A 		119
(0.3)
P 		62.4
(-3)
A 		103
C 105.3
(0.1)
A 		143.3
(3)
P 		83.9
(-1.5)
A 		130
(2)
P 		64.4
(-3)
A 		119.1
(1.2)
P 		79
avr 118.3
(1.1) 		119.1
(1.2) 		132.8
(3) 		86.8
(-3) 		101
(-1.1) 		96
(-1.8) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 48.1
(3)
M 		31.6
(-1.4)
P 		25.6
(-3)
A 		37.9
(0.3)
P 		23
B 44.5
(3)
P 		27
(-1.8)
A 		23.1
(-2.9)
A 		22.6
(-3)
M 		22
C 31.1
(-0.6)
A 		30.4
(-0.9)
A 		26.3
(-3)
A 		38.1
(3)
P 		12
avr 41.2
(3) 		29.7
(-1.3) 		25
(-3) 		32.9
(-0.1) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 28.6
(1.2)
P 		29.8
(1.5)
A 		32.4
(2.1)
P 		11.1
(-3)
A 		36.1
(3)
P 		25.9
(0.6)
P 		25
B 32.8
(-0.7)
A 		43.4
(1.8)
A 		40.3
(1.1)
A 		22.9
(-3)
A 		48.3
(3)
P 		23.3
(-2.9)
A 		25
C 39
(1.8)
A 		43.7
(3)
P 		21.4
(-2.8)
A 		26.1
(-1.6)
P 		20.8
(-3)
A 		39.9
(2)
P 		23
avr 33.5
(1.3) 		39
(3) 		31.4
(0.6) 		20
(-3) 		35.1
(1.8) 		29.7
(0.1) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188667_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17632
Sequence Type Exemplar sequence
Representative Public ID B0302.6 NCBI
Target Description B0302.6 /REP_DB=WormBase Gene ID /WP=CE03871 /GB=AAK68673.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=reverse transcriptase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078385(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078385 NCBI Caenorhabditis elegans B0302.6 (B0302.6) mRNA, complete cds. 11/11 None
B0302.6 ENSEMBL cdna:known chromosome:CEL140:X:17195812:17197253:-1 gene:B0302.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
F29C4.3 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14011161-14012080(+) 34.32 74.3
Public Domain and Genome References
Ensembl B0302.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_510786 B0302.6 [Caenorhabditis elegans] 0.0
blast T21231 hypothetical protein F22B3.3 - Caenorhabditis elegans 1.0E-103
blast T20051 hypothetical protein C49A1.8 - Caenorhabditis elegans 1.0E-102
Protein Domains
Database ID Description E-Value
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 1.3E-11
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 3.4E-24
Sequence
Target Sequence 
>C. ELEGANS:188667_AT
gcatatcaatagaacctcttccctggcacttcttagggcaaaacagatcctaaaatcctt
cccctctggctccaataaattctatgtgaacctgtttaaaacgtatgtctcaccaattct
tgactatgggtcccacatttactcccctccccctcattcaaaactgtcaggtgcattaga
atccgctctcaaatactactcaagaataatactacaacgtaacaatatacaatacaaagt
atcggaaacatcacatagaaacacctcattagtttattcactttcatataaaaaccgcct
gagcattctcaacatggccacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATATCAATAGAACCTCTTCCCTG 697 307 645 Antisense
TCTTCCCTGGCACTTCTTAGGGCAA 430 617 661 Antisense
TTCCCCTCTGGCTCCAATAAATTCT 324 697 703 Antisense
AAAACGTATGTCTCACCAATTCTTG 674 127 742 Antisense
GACTATGGGTCCCACATTTACTCCC 638 107 766 Antisense
CTCCCCCTCATTCAAAACTGTCAGG 546 231 791 Antisense
GTCAGGTGCATTAGAATCCGCTCTC 178 467 810 Antisense
AGAATCCGCTCTCAAATACTACTCA 596 73 822 Antisense
ACACCTCATTAGTTTATTCACTTTC 617 107 905 Antisense
ATAAAAACCGCCTGAGCATTCTCAA 419 23 932 Antisense
CTGAGCATTCTCAACATGGCCACAG 183 239 943 Antisense
Sequence Source Affymetrix Proprietary Database