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[188665_at] Ank repeat

Description C33A11.1 /REP_DB=WormBase Gene ID /WP=CE24824 /TR=Q93318 /GB=CAB61033.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Ank repeat
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 17      4grp_highest_8_8 > 61      4grp_high_8_8 > 17      6grp_highest_nonorm > 40      6grp_total > 06      4grp_total > 30      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 624
1 2 3 4 range
A 1146.7
(3)
P 		660.3
(-2.3)
P 		591
(-3)
P 		839.3
(-0.3)
P 		556
B 901.7
(3)
P 		681.4
(-0.5)
P 		522.8
(-3)
P 		882.2
(2.7)
P 		379
C 993.7
(3)
P 		762.3
(-0.2)
P 		555.6
(-3)
P 		813
(0.5)
P 		438
avr 1014
(3) 		701.3
(-1.1) 		556.5
(-3) 		844.8
(0.8) 		458

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 723
1 2 3 4 5 6 range
A 814.1
(3)
P 		737.5
(1.5)
P 		574.7
(-1.7)
P 		506.9
(-3)
P 		634.1
(-0.5)
P 		620.5
(-0.8)
P 		307
B 1027.4
(3)
P 		839.9
(0.7)
P 		747.9
(-0.4)
P 		531.4
(-3)
P 		609.2
(-2.1)
P 		591.6
(-2.3)
P 		496
C 1204.8
(3)
P 		843.5
(0)
P 		545.9
(-2.5)
P 		481.9
(-3)
P 		652.3
(-1.6)
P 		516.1
(-2.7)
P 		723
avr 1015.4
(3) 		807
(0.5) 		622.8
(-1.6) 		506.7
(-3) 		631.9
(-1.5) 		576.1
(-2.2) 		509
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 296
1 2 3 4 range
A 417.5
(3)
P 		143.3
(-2.6)
P 		154.5
(-2.4)
P 		122.9
(-3)
P 		295
B 287.5
(3)
P 		168.3
(-1.3)
P 		121.1
(-3)
P 		188
(-0.6)
P 		166
C 329
(3)
P 		219.2
(-0.4)
P 		193.6
(-1.2)
P 		137.1
(-3)
P 		192
avr 344.7
(3) 		176.9
(-2.2) 		156.4
(-2.8) 		149.3
(-3) 		195

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 350
1 2 3 4 5 6 range
A 150.1
(-1.9)
P 		262.3
(3)
P 		125.2
(-3)
P 		128.6
(-2.9)
P 		191.3
(-0.1)
P 		151.1
(-1.9)
P 		137
B 357.5
(3)
P 		279.6
(0.8)
P 		181.6
(-1.9)
P 		140.8
(-3)
P 		247.5
(-0)
P 		220.6
(-0.8)
P 		217
C 446.5
(3)
P 		257.4
(-0.2)
P 		138.9
(-2.3)
P 		96.9
(-3)
P 		211.1
(-1)
P 		172.8
(-1.7)
P 		350
avr 318
(3) 		266.4
(1.4) 		148.6
(-2.2) 		122.1
(-3) 		216.6
(-0.1) 		181.5
(-1.2) 		196
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188665_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17854
Sequence Type Exemplar sequence
Representative Public ID C33A11.1 NCBI
Target Description C33A11.1 /REP_DB=WormBase Gene ID /WP=CE24824 /TR=Q93318 /GB=CAB61033.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Ank repeat
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078139(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078139 NCBI Caenorhabditis elegans C33A11.1 (C33A11.1) mRNA, complete cds. 11/11 None
GENEFINDER00000038759 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15355344:15363146:1 11/11 None
SNAP00000038752 ENSEMBL cdna:SNAP chromosome:CEL140:X:15360863:15363146:1 11/11 None
C33A11.1.1 ENSEMBL cdna:known chromosome:CEL140:X:15355155:15363781:1 gene:C33A11.1 11/11 A 
C33A11.1.2 ENSEMBL cdna:known chromosome:CEL140:X:15355155:15363749:1 gene:C33A11.1 11/11 None
C33A11.1.3 ENSEMBL cdna:known chromosome:CEL140:X:15355157:15363773:1 gene:C33A11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15355156-15363146(+) 93.25 100.0
Public Domain and Genome References
Gene Title Ank repeat
Ensembl C33A11.1
Entrez Gene 181625 Entrez gene
SwissProt Q93318 EMBL-EBI
WormBase CE24824 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01860 Hypothetical protein C33A11.1 [Caenorhabditis elegans] emb|CAB61033.1| Hypothetical protein C33A11.1 [Caenorhabditis elegans] ref|NP_510540.1| C33A11.1 [Caenorhabditis elegans] 0.0
blast CAE63301 Hypothetical protein CBG07688 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002110 EMBL-EBI Ankyrin 0.055
Pfam IPR002110 EMBL-EBI Ankyrin 3.4E-8
Pfam IPR002110 EMBL-EBI Ankyrin 3.9E-4
Pfam IPR002110 EMBL-EBI Ankyrin 7.6E-6
Pfam IPR002110 EMBL-EBI Ankyrin 0.055
Pfam IPR002110 EMBL-EBI Ankyrin 3.4E-8
Pfam IPR002110 EMBL-EBI Ankyrin 3.9E-4
Pfam IPR002110 EMBL-EBI Ankyrin 7.6E-6
Pfam IPR002110 EMBL-EBI Ankyrin 0.055
Pfam IPR002110 EMBL-EBI Ankyrin 3.4E-8
Pfam IPR002110 EMBL-EBI Ankyrin 3.9E-4
Pfam IPR002110 EMBL-EBI Ankyrin 1.4E-5
Sequence
Target Sequence 
>C. ELEGANS:188665_AT
gagacaccactttatgtcgcggttttgcaaagaagcattgaggttgttgagtacttgctt
gagcttggagcttctccaaacagtcgtagctctcgcgcagttggagattcaccacttcat
ttcgccacagctcgtggaatgaacaatatggttgaggccctgctcagcaagcgagagatt
cgtgtgaatgaaaccaatgatgatggtcaaacttcactgttgtgtgcggttaaaatgcat
ggaatgatggatgagcagacacagcacaaaattgacaacaagtccatcatcgaaatgctc
atcaaggctggagcagatccaacgattgctgaaacttcaactggaaagacaattgtacat
catgctgtcgacaagatggacgtggaacttttagatttcttaaaaaccgttgtcaacgaa
gacacgttcaccgagttggcaaatctctccgacttccatggagacaccgcagtcgacctt
ttgtgtagttccacccagaacgaggacacgaataatgtccgcgaaaatctatacatccga
ctcctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGACACCACTTTATGTCGCGGTTT 306 393 1267 Antisense
GAGGTTGTTGAGTACTTGCTTGAGC 584 403 1306 Antisense
TTCTCCAAACAGTCGTAGCTCTCGC 198 693 1338 Antisense
GTAGCTCTCGCGCAGTTGGAGATTC 504 457 1352 Antisense
TGGAGATTCACCACTTCATTTCGCC 321 549 1368 Antisense
TCATTTCGCCACAGCTCGTGGAATG 616 619 1383 Antisense
CAATATGGTTGAGGCCCTGCTCAGC 455 181 1410 Antisense
GAAGACACGTTCACCGAGTTGGCAA 464 339 1684 Antisense
CGACTTCCATGGAGACACCGCAGTC 635 251 1716 Antisense
CACCGCAGTCGACCTTTTGTGTAGT 229 201 1731 Antisense
GAAAATCTATACATCCGACTCCTGA 590 353 1789 Antisense
Sequence Source Affymetrix Proprietary Database