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[188664_at] Ets-domain

Description C33A11.4 /REP_DB=WormBase Gene ID /WP=CE08548 /TR=Q93320 /GB=CAB01871.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Ets-domain
Cluster 6grp_high1_10_10 > 29      4grp_highest_8_8 > 46      4grp_high_8_8 > 10      6grp_total > 26      4grp_total > 22      6grp_cgc > 04      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 486
1 2 3 4 range
A 649.1
(2.6)
P 		242.3
(-3)
P 		248.7
(-2.9)
P 		675.4
(3)
P 		433
B 628
(1.8)
P 		276.5
(-2.6)
P 		245.8
(-3)
P 		728.4
(3)
P 		483
C 632.8
(3)
P 		380.1
(-1.4)
P 		288.9
(-3)
P 		632.2
(3)
P 		344
avr 636.6
(2.4) 		299.6
(-2.4) 		261.1
(-3) 		678.7
(3) 		418

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 408
1 2 3 4 5 6 range
A 433.2
(0.7)
P 		565.6
(3)
P 		216.7
(-3)
P 		230.9
(-2.8)
P 		282.9
(-1.9)
P 		361.5
(-0.5)
P 		349
B 568.3
(3)
P 		459.6
(1.1)
P 		252.1
(-2.4)
P 		219.8
(-3)
P 		323.5
(-1.2)
P 		323.8
(-1.2)
P 		349
C 619.3
(3)
P 		472.4
(0.8)
P 		270.6
(-2.1)
P 		211.7
(-3)
A 		381.6
(-0.5)
P 		297.3
(-1.7)
P 		408
avr 540.3
(3) 		499.2
(2.2) 		246.5
(-2.5) 		220.8
(-3) 		329.3
(-1) 		327.5
(-1) 		320
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 184
1 2 3 4 range
A 236.3
(3)
P 		52.6
(-3)
P 		65
(-2.6)
P 		98.9
(-1.5)
P 		184
B 200.3
(3)
P 		68.3
(-2.5)
P 		57
(-3)
P 		155.2
(1.1)
P 		143
C 209.5
(3)
P 		109.3
(-2.5)
P 		100.7
(-3)
P 		106.6
(-2.7)
P 		109
avr 215.4
(3) 		76.7
(-2.9) 		74.2
(-3) 		120.2
(-1) 		141

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 187
1 2 3 4 5 6 range
A 79.9
(-1.7)
P 		201.2
(3)
P 		47.2
(-3)
P 		58.6
(-2.6)
P 		85.4
(-1.5)
P 		88
(-1.4)
P 		154
B 197.7
(3)
P 		153
(1.1)
P 		61.2
(-2.9)
P 		58.2
(-3)
P 		131.4
(0.1)
P 		120.7
(-0.3)
P 		140
C 229.5
(3)
P 		144.1
(0.3)
P 		68.9
(-2.2)
P 		42.6
(-3)
A 		123.5
(-0.4)
P 		99.5
(-1.2)
P 		187
avr 169
(3) 		166.1
(2.8) 		59.1
(-2.7) 		53.1
(-3) 		113.4
(0.1) 		102.7
(-0.4) 		116
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188664_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17389
Sequence Type Exemplar sequence
Representative Public ID C33A11.4 NCBI
Target Description C33A11.4 /REP_DB=WormBase Gene ID /WP=CE08548 /TR=Q93320 /GB=CAB01871.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Ets-domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078141(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078141 NCBI Caenorhabditis elegans C33A11.4 (Ets-domain) mRNA, complete cds. 11/11 None
GENEFINDER00000038757 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15370226:15372972:-1 11/11 None
SNAP00000038755 ENSEMBL cdna:SNAP chromosome:CEL140:X:15370559:15373208:-1 9/11 None
C33A11.4 ENSEMBL cdna:known chromosome:CEL140:X:15369915:15377602:-1 gene:C33A11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15370374-15377602(-) 100.0 100.0
Public Domain and Genome References
Gene Title Ets-domain
Ensembl C33A11.4
Entrez Gene 181627 Entrez gene
SwissProt Q93320 EMBL-EBI
WormBase CE31678 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01871 Hypothetical protein C33A11.4 [Caenorhabditis elegans] emb|CAB01862.4| Hypothetical protein C33A11.4 [Caenorhabditis elegans] ref|NP_510542.2| C33A11.4 [Caenorhabditis elegans] 0.0
blast CAE63304 Hypothetical protein CBG07691 [Caenorhabditis briggsae] 0.0
blast AAU11487 ETS-family transcription factor [Chlamys farreri] 1.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR003118 EMBL-EBI Sterile alpha motif (SAM)/Pointed domain 2.5E-34
Pfam IPR000418 EMBL-EBI Ets-domain 2.3E-29
Pfam IPR003118 EMBL-EBI Sterile alpha motif (SAM)/Pointed domain 2.5E-34
Pfam IPR000418 EMBL-EBI Ets-domain 2.3E-29
Pfam IPR003118 EMBL-EBI Sterile alpha motif (SAM)/Pointed domain 2.5E-34
Pfam IPR000418 EMBL-EBI Ets-domain 2.3E-29
Sequence
Target Sequence 
>C. ELEGANS:188664_AT
gagtcaactatcagctatcaagccggttaaaccccgcgtcaccgcttctcagtgcgccga
tccaaccaaagttgtcgccaatgctcaaatattcatgcacgatcaacaccgaatacgaag
tgccagaagaaaggtcggctgaaagcagtgacttgaaaatcaaaaagaacaaagatggca
aaccaagaaagcgttcgcaacacacgaagggtaataaattgtgggagtttatcagagatg
cgttgaaagacccatcaacttgtccgtctgttgtgagatgggaagacccgattgaaggag
tattccgtatcgtggagtcagagaagctggctcggctgtggggagctcgaaaaaacaatg
aaaaaatgacatatgaaaagctcagtcgagcgatgagaacctactacgaaaagcaaatac
tggttccagtcccaaaaactggtctttatccgaagaaactggtgtacaagttcggaccag
gtgcccatggtttccaagaaattccagtcaatcagtgtcagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTCAACTATCAGCTATCAAGCCG 511 399 1010 Antisense
GCGCCGATCCAACCAAAGTTGTCGC 7 289 1063 Antisense
AGTTGTCGCCAATGCTCAAATATTC 527 65 1079 Antisense
ATGCACGATCAACACCGAATACGAA 389 43 1104 Antisense
GAAAGACCCATCAACTTGTCCGTCT 361 359 1254 Antisense
GGAGTATTCCGTATCGTGGAGTCAG 545 517 1306 Antisense
GAGTCAGAGAAGCTGGCTCGGCTGT 698 399 1324 Antisense
GGCTCGGCTGTGGGGAGCTCGAAAA 23 539 1338 Antisense
TGTACAAGTTCGGACCAGGTGCCCA 151 557 1472 Antisense
CAGGTGCCCATGGTTTCCAAGAAAT 153 209 1487 Antisense
GAAATTCCAGTCAATCAGTGTCAGG 398 363 1507 Antisense
Sequence Source Affymetrix Proprietary Database