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[188661_s_at] troponin I

Description F42E11.4 /REP_DB=WormBase Gene ID /WP=CE03311 /TR=Q20334 /GB=CAA91466.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=troponin I
Cluster 6grp_highest_10_10 > 31      6grp_high1_10_10 > 03      4grp_high_8_8 > 53      6grp_highest_nonorm > 02      6grp_total > 24      4grp_total > 51      6grp_highest_sub > De      6grp_cgc > 31      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5152
1 2 3 4 range
A 1975.1
(-0.9)
P 		5321.5
(3)
P 		3921
(1.4)
P 		173.1
(-3)
M 		5148
B 2187.5
(-0.6)
P 		5135.8
(3)
P 		4346.4
(2)
P 		170
(-3)
P 		4966
C 1954.7
(-0.9)
P 		5158.7
(3)
P 		4227.4
(1.9)
P 		215.4
(-3)
A 		4943
avr 2039.1
(-0.8) 		5205.3
(3) 		4164.9
(1.8) 		186.2
(-3) 		5019

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3090
1 2 3 4 5 6 range
A 3409.8
(3)
P 		3243.3
(2.6)
P 		2257
(0.3)
P 		1625.8
(-1.2)
P 		976.2
(-2.7)
P 		851.6
(-3)
P 		2558
B 3555.7
(3)
P 		2647
(1.1)
P 		2223.6
(0.2)
P 		1617
(-1.1)
P 		1006.1
(-2.4)
P 		716.8
(-3)
P 		2839
C 3806.6
(3)
P 		3232.7
(1.9)
P 		2339.4
(0.1)
P 		1689.5
(-1.2)
P 		810.3
(-3)
P 		864
(-2.9)
P 		2996
avr 3590.7
(3) 		3041
(1.8) 		2273.3
(0.2) 		1644.1
(-1.2) 		930.9
(-2.7) 		810.8
(-3) 		2780
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1458
1 2 3 4 range
A 719.1
(0.7)
P 		1155.2
(3)
P 		1025
(2.3)
P 		25.3
(-3)
M 		1130
B 697.6
(0.2)
P 		1268.4
(3)
P 		1007.2
(1.7)
P 		36.2
(-3)
P 		1232
C 647.1
(-0.5)
P 		1483.2
(3)
P 		1473.4
(3)
P 		36.3
(-3)
A 		1447
avr 687.9
(0.1) 		1302.3
(3) 		1168.5
(2.4) 		32.6
(-3) 		1270

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1204
1 2 3 4 5 6 range
A 628.6
(-0.3)
P 		1153.5
(3)
P 		491.5
(-1.2)
P 		412.3
(-1.7)
P 		294.6
(-2.4)
P 		207.3
(-3)
P 		946
B 1237.2
(3)
P 		881.1
(0.8)
P 		540
(-1.3)
P 		428.3
(-2)
P 		408.8
(-2.1)
P 		267.3
(-3)
P 		970
C 1410.9
(3)
P 		986.4
(0.8)
P 		595.4
(-1.3)
P 		339.8
(-2.6)
P 		262.2
(-3)
P 		289.2
(-2.9)
P 		1149
avr 1092.2
(3) 		1007
(2.4) 		542.3
(-0.9) 		393.5
(-2) 		321.9
(-2.5) 		254.6
(-3) 		838
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188661_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16679
Sequence Type Exemplar sequence
Representative Public ID F42E11.4 NCBI
Target Description F42E11.4 /REP_DB=WormBase Gene ID /WP=CE03311 /TR=Q20334 /GB=CAA91466.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=troponin I
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077505(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077505 NCBI Caenorhabditis elegans TropoNin I family member (tni-1) (tni-1) mRNA, complete cds. 11/11 None
SNAP00000010142 ENSEMBL cdna:SNAP chromosome:CEL140:X:11376085:11377385:-1 11/11 None
GENEFINDER00000010146 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11376085:11377394:-1 11/11 None
F42E11.4.1 ENSEMBL cdna:known chromosome:CEL140:X:11375811:11377394:-1 gene:F42E11.4 11/11 None
F42E11.4.2 ENSEMBL cdna:known chromosome:CEL140:X:11375866:11377396:-1 gene:F42E11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11376084-11377385(-) 93.36 100.0
Public Domain and Genome References
Gene Title troponin I
Gene Symbol tni-1
Ensembl F42E11.4
Entrez Gene 181329 Entrez gene
SwissProt Q20334 EMBL-EBI
WormBase CE03311 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91466 Hypothetical protein F42E11.4 [Caenorhabditis elegans] ref|NP_509906.1| TropoNin I family member (tni-1) [Caenorhabditis elegans] dbj|BAD89379.1| troponin I 1 [Caenorhabditis elegans] sp|Q20334|TNNI1_CAEEL Troponin I 1 (TnI 1) 1.0E-96
blast CAE70648 Hypothetical protein CBG17351 [Caenorhabditis briggsae] 1.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR001978 EMBL-EBI Troponin 1.0E-50
Pfam IPR001978 EMBL-EBI Troponin 1.0E-50
Sequence
Target Sequence 
>C. ELEGANS:188661_S_AT
aggctgctgaggatcttaagacacagcaattgcggaaggaacaagaaagagtcaaggtcc
ttgctgaaagaaccgttgctcttccaaatgttgacagcattgatgatcacgctaagctcg
aggctatctacaatgatttgttctcccgcctctgcaacttggaggaagagaaatatgata
tcaaccacatcaccacagagactgaaactacaattaatcaactcaacattgaggttaacg
atcttcgtggaaaattcgtaaaaccatcattgaagaaggtgtccaagtatgacaacaagt
tcaagaagatggctgaagccaagaaggaagatggaagcaagaacttgagaaataatctca
agacagtaaagaaagagagcgtcttcactcaaattgccaacaagaagaaatctgacaagc
cagaatggtccaagaagaaggaagagaagaaggaagaaagcgccccagaaccagttattg
agccagttgaggaagaagaaactgctgcttctgagggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGCTGCTGAGGATCTTAAGACACA 99 53 215 Antisense
GTCCTTGCTGAAAGAACCGTTGCTC 493 477 271 Antisense
AACCGTTGCTCTTCCAAATGTTGAC 288 145 285 Antisense
GTTGACAGCATTGATGATCACGCTA 122 439 304 Antisense
GATCACGCTAAGCTCGAGGCTATCT 218 421 319 Antisense
ATCTACAATGATTTGTTCTCCCGCC 196 33 340 Antisense
TCCCGCCTCTGCAACTTGGAGGAAG 333 597 358 Antisense
TCAACCACATCACCACAGAGACTGA 614 631 395 Antisense
GAGCGTCTTCACTCAAATTGCCAAC 342 387 591 Antisense
GCGCCCCAGAACCAGTTATTGAGCC 608 287 674 Antisense
GAAGAAACTGCTGCTTCTGAGGGAG 41 341 709 Antisense
Sequence Source Affymetrix Proprietary Database