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[188660_s_at] peptidase

Description F28A12.4 /REP_DB=WormBase Gene ID /WP=CE09738 /TR=Q22972 /GB=AAC47989.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=peptidase
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 72      6grp_highest_nonorm > 25      6grp_total > 72      4grp_total > 59      6grp_highest_sub > 03_04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3189
1 2 3 4 range
A 1467.2
(-0.3)
P 		2212.8
(1.1)
P 		3225.3
(3)
P 		50.8
(-3)
A 		3175
B 1819.5
(0.6)
P 		2604.1
(2.2)
P 		3023.8
(3)
P 		36.5
(-3)
A 		2987
C 1292.8
(-0.6)
P 		2500.1
(1.8)
P 		3128.1
(3)
P 		101.6
(-3)
A 		3027
avr 1526.5
(-0.1) 		2439
(1.7) 		3125.7
(3) 		63
(-3) 		3063

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4750
1 2 3 4 5 6 range
A 2352.5
(-3)
P 		3572
(-1.4)
P 		6761.1
(2.7)
P 		6973.8
(3)
P 		4536.6
(-0.2)
P 		2887.4
(-2.3)
P 		4621
B 2307.8
(-3)
P 		3623.9
(-1.1)
P 		5857.3
(2.1)
P 		6483.7
(3)
P 		4918
(0.8)
P 		2965.3
(-2.1)
P 		4176
C 2224
(-3)
P 		3460
(-1.4)
P 		6900.4
(3)
P 		6741.6
(2.8)
P 		4979.6
(0.5)
P 		3040.7
(-2)
P 		4676
avr 2294.8
(-3) 		3552
(-1.3) 		6506.3
(2.7) 		6733
(3) 		4811.4
(0.4) 		2964.5
(-2.1) 		4438
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1083
1 2 3 4 range
A 534.2
(0.8)
P 		480.3
(0.4)
P 		843.2
(3)
P 		7.4
(-3)
A 		836
B 580.2
(2)
P 		643.2
(2.5)
P 		700.7
(3)
P 		7.8
(-3)
A 		693
C 428
(-0.7)
P 		718.8
(0.9)
P 		1090.2
(3)
P 		17.1
(-3)
A 		1073
avr 514.1
(0.5) 		614.1
(1.2) 		878
(3) 		10.8
(-3) 		867

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1564
1 2 3 4 5 6 range
A 433.7
(-3)
P 		1270.4
(0.8)
P 		1472.4
(1.7)
P 		1768.7
(3)
P 		1369
(1.2)
P 		703
(-1.8)
P 		1335
B 803
(-3)
P 		1206.2
(-1)
P 		1422.3
(0.1)
P 		1717.3
(1.6)
P 		1998.1
(3)
P 		1105.8
(-1.5)
P 		1195
C 824.3
(-3)
P 		1055.7
(-1.5)
P 		1756.3
(3)
P 		1355.7
(0.4)
P 		1611.3
(2.1)
P 		1017.9
(-1.8)
P 		932
avr 687
(-3) 		1177.4
(0) 		1550.3
(2.3) 		1613.9
(2.7) 		1659.5
(3) 		942.2
(-1.4) 		973
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188660_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11980
Sequence Type Exemplar sequence
Representative Public ID F28A12.4 NCBI
Target Description F28A12.4 /REP_DB=WormBase Gene ID /WP=CE09738 /TR=Q22972 /GB=AAC47989.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=peptidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072831(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072831 NCBI Caenorhabditis elegans F28A12.4 (peptidase) mRNA, complete cds. 11/11 None
SNAP00000012219 ENSEMBL cdna:SNAP chromosome:CEL140:V:8644208:8645778:-1 11/11 None
GENEFINDER00000012220 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8644208:8645778:-1 11/11 None
F28A12.4.1 ENSEMBL cdna:known chromosome:CEL140:V:8644165:8645781:-1 gene:F28A12.4 11/11 None
F28A12.4.2 ENSEMBL cdna:known chromosome:CEL140:V:8644195:8645813:-1 gene:F28A12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8644208-8645779(-) 100.0 100.0
Public Domain and Genome References
Gene Title peptidase
Ensembl F28A12.4
Entrez Gene 179247 Entrez gene
SwissProt Q22972 EMBL-EBI
WormBase CE09738 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4190 aspartic-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
4194 pepsin A activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC47989 Hypothetical protein F28A12.4 [Caenorhabditis elegans] ref|NP_505232.1| F28A12.4 [Caenorhabditis elegans] 0.0
blast CAE58341 Hypothetical protein CBG01462 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001461 EMBL-EBI Peptidase A1, pepsin 7.5E-48
Sequence
Target Sequence 
>C. ELEGANS:188660_S_AT
ctacttgatcagccacttttcactacatggtttggtcagagaggtgctcctggaacttct
gcaagtggtgcattcacttatggaggattggataaaaaccattgtgggccagttattgga
tatgcggaactaactaatgctagacattttcagttccaggcaaccggattttctcttggc
tcatatgtatccacaaccacatatgaggtaatcaccgataccgctacttcatttctatgt
ggacctcaagctgcaattgacaacttggctaaagctgcaggagctacttgggacccaaca
aatcaagtatttaacattccttgtgatgccgacgcggggccaattaagatgaaaattggc
caattcaactatgttattcgagcaaataactacattttgaagattgatacaaactcctgc
cttttcgctgcaattccacaaaactatgctggtttcggaccttcatggattctcggtgga
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTACTTGATCAGCCACTTTTCACTA 151 227 628 Antisense
AGAGAGGTGCTCCTGGAACTTCTGC 272 67 665 Antisense
GCTAGACATTTTCAGTTCCAGGCAA 297 303 766 Antisense
TCCAGGCAACCGGATTTTCTCTTGG 653 589 782 Antisense
TTGGCTCATATGTATCCACAACCAC 413 709 803 Antisense
ATACCGCTACTTCATTTCTATGTGG 326 23 845 Antisense
TTCTATGTGGACCTCAAGCTGCAAT 52 689 860 Antisense
TGATGCCGACGCGGGGCCAATTAAG 351 565 951 Antisense
CCTTTTCGCTGCAATTCCACAAAAC 400 269 1047 Antisense
AACTATGCTGGTTTCGGACCTTCAT 425 139 1069 Antisense
GGACCTTCATGGATTCTCGGTGGAC 170 523 1084 Antisense
Sequence Source Affymetrix Proprietary Database