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[188658_at] PHD-finger.

Description F17A2.3 /REP_DB=WormBase Gene ID /WP=CE05646 /TR=Q19511 /GB=CAA92158.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=PHD-finger.
Cluster 6grp_total > 0      4grp_total > 47      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 10.7
(1.1)
A 		13.3
(3)
A 		5.1
(-3)
A 		6.2
(-2.2)
A 		8
B 32
(3)
A 		7.3
(-2.5)
A 		11.5
(-1.5)
A 		4.9
(-3)
A 		27
C 17.4
(3)
A 		6.1
(-3)
A 		11.5
(-0.1)
A 		14
(1.2)
A 		11
avr 20
(3) 		8.9
(-2.7) 		9.4
(-2.5) 		8.4
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 18.7
(-0.5)
A 		38.2
(3)
A 		13.1
(-1.5)
A 		4.4
(-3)
A 		9.6
(-2.1)
A 		26.6
(0.9)
A 		34
B 12.5
(-0.4)
A 		8.6
(-1.5)
A 		9.1
(-1.4)
A 		24.3
(3)
A 		6.9
(-2)
A 		3.5
(-3)
A 		21
C 3.4
(-3)
A 		9.5
(0.9)
A 		8
(-0.1)
A 		7.9
(-0.2)
A 		12.9
(3)
A 		10
(1.2)
A 		10
avr 11.5
(-1.9) 		18.8
(3) 		10.1
(-2.8) 		12.2
(-1.4) 		9.8
(-3) 		13.4
(-0.6) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 3.9
(3)
A 		2.9
(1)
A 		1.3
(-2.2)
A 		0.9
(-3)
A 		3
B 10.2
(3)
A 		1.8
(-2.5)
A 		2.7
(-1.9)
A 		1.1
(-3)
A 		9
C 5.8
(3)
A 		1.8
(-3)
A 		4
(0.3)
A 		2.4
(-2.1)
A 		4
avr 6.6
(3) 		2.2
(-2.2) 		2.7
(-1.6) 		1.5
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 3.4
(-1.9)
A 		13.6
(3)
A 		2.9
(-2.1)
A 		1.1
(-3)
A 		2.9
(-2.1)
A 		6.5
(-0.4)
A 		13
B 4.4
(0.6)
A 		2.9
(-1.1)
A 		2.2
(-1.9)
A 		6.4
(3)
A 		2.8
(-1.2)
A 		1.3
(-3)
A 		5
C 1.3
(-3)
A 		2.9
(0.3)
A 		2
(-1.6)
A 		1.6
(-2.4)
A 		4.2
(3)
A 		3.4
(1.3)
A 		3
avr 3
(-2.1) 		6.5
(3) 		2.4
(-3) 		3
(-2.1) 		3.3
(-1.7) 		3.7
(-1.1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188658_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17071
Sequence Type Exemplar sequence
Representative Public ID F17A2.3 NCBI
Target Description F17A2.3 /REP_DB=WormBase Gene ID /WP=CE05646 /TR=Q19511 /GB=CAA92158.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=PHD-finger.
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077656(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077656 NCBI Caenorhabditis elegans F17A2.3 (PHD-finger.) mRNA, complete cds. 11/11 None
GENEFINDER00000014138 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12306916:12309469:1 11/11 None
SNAP00000014126 ENSEMBL cdna:SNAP chromosome:CEL140:X:12308503:12309774:1 11/11 None
F17A2.3 ENSEMBL cdna:known chromosome:CEL140:X:12306916:12309403:1 gene:F17A2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12306915-12309403(+) 100.0 100.0
Public Domain and Genome References
Gene Title PHD-finger.
Ensembl F17A2.3
Entrez Gene 184600 Entrez gene
SwissProt Q19511 EMBL-EBI
WormBase CE05646 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92158 Hypothetical protein F17A2.3 [Caenorhabditis elegans] ref|NP_510057.1| F17A2.3 [Caenorhabditis elegans] 0.0
blast CAA92158 Hypothetical protein F17A2.3 [Caenorhabditis elegans] ref|NP_510057.1| F17A2.3 [Caenorhabditis elegans] 1.0E-133
blast CAA92158 Hypothetical protein F17A2.3 [Caenorhabditis elegans] ref|NP_510057.1| F17A2.3 [Caenorhabditis elegans] 1.0E-126
blast CAA90618 Hypothetical protein K09A11.5 [Caenorhabditis elegans] ref|NP_510206.2| K09A11.5 [Caenorhabditis elegans] 3.0E-25
blast CAA90618 Hypothetical protein K09A11.5 [Caenorhabditis elegans] ref|NP_510206.2| K09A11.5 [Caenorhabditis elegans] 4.0E-25
blast CAA97781 Hypothetical protein C44B9.4 [Caenorhabditis elegans] ref|NP_499397.2| C44B9.4 [Caenorhabditis elegans] 4.0E-18
blast CAA97781 Hypothetical protein C44B9.4 [Caenorhabditis elegans] ref|NP_499397.2| C44B9.4 [Caenorhabditis elegans] 5.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 6.6E-16
Sequence
Target Sequence 
>C. ELEGANS:188658_AT
aaaggatctgcgttcatctgaggatcaagttttgacagaagatttaccagccgcatcaaa
aacaccacctgcatcaatttcagaacttgatatgggagaacaaggagccgagcaaagggt
aactcgaagcgttcattccacgagctcaaatgagctttctgagccaattgaagttcatct
gctggttgataaaagtgaagtgaaccgccatatcaaatcaaaggagcatccgctgttaga
ggatcaaaattttactgcatgcattccggaagcatcaccagcattggtaccactaacgac
agcctcgacaccacagcatctaacctttaaactaccacaaacagcagcactgccaatgtc
ttcaccggaagattatttgattcacactgcctcccatataatttatagacaggtggcaga
actagcaaaaagtttagagccaagcgctctagctgcgagagatttgactttcttcatatc
acacagaacccaaaactcaacagaaattcaaagaaatgctccacgagctggggcacctgt
caccaatcattcatcagtcgttcaggctcatcttaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGGATCTGCGTTCATCTGAGGAT 286 121 789 Antisense
GACAGAAGATTTACCAGCCGCATCA 430 367 822 Antisense
AAAAACACCACCTGCATCAATTTCA 181 129 846 Antisense
GGGTAACTCGAAGCGTTCATTCCAC 188 487 905 Antisense
CATTCCGGAAGCATCACCAGCATTG 245 217 1050 Antisense
ACACCACAGCATCTAACCTTTAAAC 62 109 1096 Antisense
AAACTACCACAAACAGCAGCACTGC 634 127 1117 Antisense
TCACACTGCCTCCCATATAATTTAT 20 629 1170 Antisense
AGAAATGCTCCACGAGCTGGGGCAC 626 71 1300 Antisense
GCACCTGTCACCAATCATTCATCAG 477 315 1321 Antisense
ATCAGTCGTTCAGGCTCATCTTAAT 649 29 1341 Antisense
Sequence Source Affymetrix Proprietary Database