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[188655_s_at]

Description F59A2.1 /REP_DB=WormBase Gene ID /WP=CE17939 /TR=Q21021 /GB=CAA84330.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Nucleoporin
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 48      4grp_highest_8_8 > 25      4grp_high_8_8 > 59      6grp_highest_nonorm > 77      6grp_total > 49      4grp_total > 60      6grp_highest_sub > Cu      6grp_cgc > 18      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1007
1 2 3 4 range
A 2040.9
(2.8)
P 		1636.1
(-1.2)
P 		2063.4
(3)
P 		1453.7
(-3)
P 		610
B 2216.7
(3)
P 		2099.7
(1.9)
P 		2169.7
(2.6)
P 		1560.7
(-3)
P 		656
C 1919.5
(1.8)
P 		2100.7
(3)
P 		2059.9
(2.7)
P 		1209.5
(-3)
P 		891
avr 2059
(2.7) 		1945.5
(1.7) 		2097.7
(3) 		1408
(-3) 		690

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1392
1 2 3 4 5 6 range
A 1688.8
(0.8)
P 		1793.9
(1.3)
P 		798.9
(-3)
P 		1064
(-1.9)
P 		1260
(-1)
P 		2190.6
(3)
P 		1392
B 1554
(2.1)
P 		1420
(0.8)
P 		1039.8
(-3)
P 		1085.5
(-2.5)
P 		1287.1
(-0.5)
P 		1644.4
(3)
P 		605
C 2011.1
(3)
P 		1150.2
(-1.7)
P 		1335.6
(-0.7)
P 		910.7
(-3)
P 		1587.6
(0.7)
P 		1584.4
(0.7)
P 		1100
avr 1751.3
(2.6) 		1454.7
(0.3) 		1058.1
(-2.7) 		1020.1
(-3) 		1378.2
(-0.3) 		1806.5
(3) 		786
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 539
1 2 3 4 range
A 743.1
(3)
P 		355.1
(-1.4)
P 		539.4
(0.7)
P 		212.8
(-3)
P 		530
B 706.9
(3)
P 		518.6
(-0)
P 		502.8
(-0.3)
P 		332.6
(-3)
P 		374
C 635.4
(2)
P 		604
(1.7)
P 		717.9
(3)
P 		203.9
(-3)
P 		514
avr 695.1
(3) 		492.6
(0.3) 		586.7
(1.5) 		249.8
(-3) 		445

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 571
1 2 3 4 5 6 range
A 311.3
(-1.2)
P 		638
(3)
P 		174
(-3)
P 		269.9
(-1.8)
P 		380.2
(-0.3)
P 		533.3
(1.6)
P 		464
B 540.7
(1.8)
P 		472.7
(0.7)
P 		252.5
(-3)
P 		287.5
(-2.4)
P 		522.9
(1.5)
P 		613.2
(3)
P 		361
C 745.4
(3)
P 		351
(-1.2)
P 		339.9
(-1.3)
P 		183.1
(-3)
P 		513.7
(0.5)
P 		530.4
(0.7)
P 		562
avr 532.5
(2.5) 		487.2
(1.6) 		255.5
(-2.8) 		246.8
(-3) 		472.3
(1.3) 		559
(3) 		312
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188655_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7132
Sequence Type Exemplar sequence
Representative Public ID F59A2.1 NCBI
Target Description F59A2.1 /REP_DB=WormBase Gene ID /WP=CE17939 /TR=Q21021 /GB=CAA84330.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Nucleoporin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_181972(11), NM_065302(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_181972 NCBI Caenorhabditis elegans F59A2.1b (Nucleoporin) mRNA, complete cds. 11/11 None
NM_065302 NCBI Caenorhabditis elegans F59A2.1a (Nucleoporin) mRNA, complete cds. 11/11 None
SNAP00000026715 ENSEMBL cdna:SNAP chromosome:CEL140:III:3400977:3412495:-1 11/11 None
GENEFINDER00000026725 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3400977:3404179:-1 11/11 None
F59A2.1b.1 ENSEMBL cdna:known chromosome:CEL140:III:3400573:3404262:-1 gene:F59A2.1 11/11 None
F59A2.1b.2 ENSEMBL cdna:known chromosome:CEL140:III:3400627:3404268:-1 gene:F59A2.1 11/11 None
F59A2.1b.3 ENSEMBL cdna:known chromosome:CEL140:III:3400630:3404465:-1 gene:F59A2.1 11/11 None
F59A2.1b.4 ENSEMBL cdna:known chromosome:CEL140:III:3400642:3404356:-1 gene:F59A2.1 11/11 None
F59A2.1a ENSEMBL cdna:known chromosome:CEL140:III:3400977:3404249:-1 gene:F59A2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3400976-3404249(-) 98.41 100.0
Public Domain and Genome References
Ensembl F59A2.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD82919 Hypothetical protein F59A2.1b [Caenorhabditis elegans] ref|NP_871701.1| F59A2.1b [Caenorhabditis elegans] 0.0
blast CAA84330 Hypothetical protein F59A2.1a [Caenorhabditis elegans] ref|NP_497703.1| F59A2.1a [Caenorhabditis elegans] 0.0
blast CAE65025 Hypothetical protein CBG09863 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000156 EMBL-EBI RanBP1 domain 1.0E-25
Pfam IPR000156 EMBL-EBI RanBP1 domain 1.4E-11
Pfam IPR000156 EMBL-EBI RanBP1 domain 1.1E-42
Pfam IPR000156 EMBL-EBI RanBP1 domain 5.2E-44
Pfam IPR000156 EMBL-EBI RanBP1 domain 1.1E-42
Pfam IPR000156 EMBL-EBI RanBP1 domain 1.0E-25
Pfam IPR000156 EMBL-EBI RanBP1 domain 1.4E-11
Pfam IPR000156 EMBL-EBI RanBP1 domain 1.1E-42
Pfam IPR000156 EMBL-EBI RanBP1 domain 1.0E-25
Pfam IPR000156 EMBL-EBI RanBP1 domain 1.4E-11
Pfam IPR000156 EMBL-EBI RanBP1 domain 1.1E-42
Sequence
Target Sequence 
>C. ELEGANS:188655_S_AT
ctttcagccaactctgccaaatctggctccattttcgacgcagcaaatgtcaagaaggcc
caagaagaacttgctgctcagaagaaggcaagcattttcgggagcaagaacaccacgttg
aacacgacttctgcaacttcacacgatggtgatgagacgaatgaggatggagatggggag
tatgagccagaagtcgagtttaagccagttattcctcttccggatttggttgaggtgaaa
actggtgaagaggacgaggaggtcatgttctccgccagatgcaagctttataagtactat
tcggatctcaaggagaataaggaacgtggactcggagatattaagctcctgaaaagcaat
gacaacaaatatcgaatcgtgatgcgtcgtgagcaagtccataagctctgtgccaatttc
cgtatcgaaaagtcgatgaagctcagtccgaagccaaacttgccaaatgtgctcacattt
atgtgccaggacttctcagaagacgcctccaacgctgatccagccatcttcaccgccaaa
ttcaagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTTCAGCCAACTCTGCCAAATCTG 275 223 1990 Antisense
ACCACGTTGAACACGACTTCTGCAA 232 85 2101 Antisense
ACTTCTGCAACTTCACACGATGGTG 510 103 2116 Antisense
GTTATTCCTCTTCCGGATTTGGTTG 165 447 2197 Antisense
TTCTCCGCCAGATGCAAGCTTTATA 533 693 2257 Antisense
GTGATGCGTCGTGAGCAAGTCCATA 661 483 2368 Antisense
GTCCATAAGCTCTGTGCCAATTTCC 153 477 2386 Antisense
GAAGCTCAGTCCGAAGCCAAACTTG 230 343 2427 Antisense
GCCAAACTTGCCAAATGTGCTCACA 371 279 2442 Antisense
AGGACTTCTCAGAAGACGCCTCCAA 571 55 2477 Antisense
CCATCTTCACCGCCAAATTCAAGGA 316 271 2513 Antisense
Sequence Source Affymetrix Proprietary Database