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[188647_at] peptidase

Description C07G1.1 /REP_DB=WormBase Gene ID /WP=CE06777 /TR=Q17800 /GB=AAB00662.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=peptidase
Cluster 6grp_total > 41      4grp_total > 59      6grp_cgc > 60      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 54.5
(-0.4)
A 		39.3
(-1.4)
A 		108.8
(3)
A 		14.2
(-3)
A 		95
B 34.9
(-0.5)
A 		48.2
(3)
A 		25.5
(-3)
A 		29.7
(-1.9)
A 		23
C 51.5
(-0.6)
A 		107.2
(3)
A 		53.3
(-0.4)
A 		13.1
(-3)
A 		94
avr 47
(0.7) 		64.9
(3) 		62.5
(2.7) 		19
(-3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 123
1 2 3 4 5 6 range
A 70.6
(1.2)
A 		82.5
(1.9)
A 		84.9
(2.1)
A 		99.7
(3)
M 		73.9
(1.4)
A 		4.3
(-3)
A 		95
B 53.4
(-1)
A 		67.1
(1.4)
A 		76.3
(3)
A 		41.8
(-3)
A 		63.6
(0.8)
A 		47.5
(-2)
A 		35
C 87.5
(0.9)
A 		101.6
(1.6)
A 		89
(1)
A 		127.6
(3)
P 		40.7
(-1.6)
A 		14.1
(-3)
A 		114
avr 70.5
(1.3) 		83.7
(2.5) 		83.4
(2.4) 		89.7
(3) 		59.4
(0.3) 		22
(-3) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 19.8
(1)
A 		8.5
(-1.5)
A 		28.4
(3)
A 		2.1
(-3)
A 		26
B 11.1
(2.2)
A 		11.9
(3)
A 		5.9
(-3)
A 		6.3
(-2.6)
A 		6
C 17
(0.1)
A 		30.8
(3)
A 		18.6
(0.4)
A 		2.2
(-3)
A 		29
avr 16
(2.3) 		17.1
(2.8) 		17.6
(3) 		3.5
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 13
(-0.5)
A 		29.4
(3)
A 		18.5
(0.7)
A 		25.3
(2.1)
M 		22.3
(1.5)
A 		1.1
(-3)
A 		28
B 18.6
(0.1)
A 		22.4
(1.6)
A 		18.5
(0)
A 		11.1
(-3)
A 		25.8
(3)
A 		17.7
(-0.3)
A 		15
C 32.5
(3)
A 		31
(2.7)
A 		22.6
(0.9)
A 		25.7
(1.5)
P 		13.2
(-1.2)
A 		4.7
(-3)
A 		28
avr 21.4
(1.1) 		27.6
(3) 		19.9
(0.7) 		20.7
(0.9) 		20.4
(0.8) 		7.8
(-3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188647_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9903
Sequence Type Exemplar sequence
Representative Public ID C07G1.1 NCBI
Target Description C07G1.1 /REP_DB=WormBase Gene ID /WP=CE06777 /TR=Q17800 /GB=AAB00662.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=peptidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068978(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068978 NCBI Caenorhabditis elegans C07G1.1 (peptidase) mRNA, complete cds. 11/11 None
SNAP00000020467 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8212201:8213647:1 11/11 None
GENEFINDER00000020478 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8212426:8213647:1 11/11 None
C07G1.1 ENSEMBL cdna:known chromosome:CEL140:IV:8212562:8213704:1 gene:C07G1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8212567-8213653(+) 100.0 100.0
Public Domain and Genome References
Gene Title peptidase
Gene Symbol try-2
Ensembl C07G1.1
Entrez Gene 182375 Entrez gene
SwissProt Q17800 EMBL-EBI
WormBase CE06777 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.29648.1.S1_AT similar to transmembrane protease, serine 9 cfa
CHICKEN:GGAAFFX.282.1.S1_S_AT similar to transmembrane serine protease 9; polyserase 1 gga
CHICKEN:GGAAFFX.282.2.S1_S_AT similar to transmembrane serine protease 9; polyserase 1 gga
CHICKEN:GGAAFFX.282.3.S1_AT similar to transmembrane serine protease 9; polyserase 1 gga
HG-U95D:72544_AT transmembrane protease, serine 9 hs
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4263 chymotrypsin activity inferred from electronic annotation QuickGO AmiGO
4295 trypsin activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB00662 Trypsin-like protease protein 2 [Caenorhabditis elegans] ref|NP_501379.1| C07G1.1 [Caenorhabditis elegans] 1.0E-156
blast AAB00662 Trypsin-like protease protein 2 [Caenorhabditis elegans] ref|NP_501379.1| C07G1.1 [Caenorhabditis elegans] 1.0E-151
blast CAE58436 Hypothetical protein CBG01571 [Caenorhabditis briggsae] 1.0E-144
blast CAE58436 Hypothetical protein CBG01571 [Caenorhabditis briggsae] 1.0E-139
blast XP_690540 PREDICTED: similar to Transmembrane protease, serine 9 (Polyserase-1) (Polyserine protease-1) (Polyserase-I) [Danio rerio] 6.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR001254 EMBL-EBI Peptidase S1, chymotrypsin 8.7E-78
Pfam IPR001254 EMBL-EBI Peptidase S1, chymotrypsin 1.7E-74
Pfam IPR001254 EMBL-EBI Peptidase S1, chymotrypsin 8.7E-78
Sequence
Target Sequence 
>C. ELEGANS:188647_AT
aagacacatttgatcacagcagcccattgtttcgaagaagacgaaagagtatcctcgtat
gaagttgtagttggtgactgggataacaatcagacagatggaaatgaacagattttttat
ttgcagagaattcacttttatccattatataaagacatcttctcacatgatattgcaatt
cttgaaataccgtatcctggaattgaattcaatgaatatgctcagcctatatgtcttcca
tcaaaagattttgtgtacacgcctggaagacaatgtgttgtatctggatggggaagtatg
ggattgcgttacgcggaacgacttcaagcagctctcattccaattataaatcgattcgat
tgtgtgaattcatcccaaatttactcatcaatgtcaagatcagcattctgtgctggatac
ctggaaggtggtatagattcttgccaaggtgattccggtggtccatttgcgtgtcgacgt
gaagatggagcatttgtattggctggagttatcagttggggtgatggttgtgcacaaaag
aaacaaccgggtatttatacaatggtagcaccatatctttcatggatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGACACATTTGATCACAGCAGCCC 436 153 193 Antisense
TCACAGCAGCCCATTGTTTCGAAGA 437 627 206 Antisense
TATGCTCAGCCTATATGTCTTCCAT 88 657 409 Antisense
GATTTTGTGTACACGCCTGGAAGAC 599 427 439 Antisense
GATTGCGTTACGCGGAACGACTTCA 62 435 494 Antisense
GACTTCAAGCAGCTCTCATTCCAAT 68 373 512 Antisense
ATTCATCCCAAATTTACTCATCAAT 523 11 560 Antisense
AGCATTCTGTGCTGGATACCTGGAA 186 79 594 Antisense
TGCCAAGGTGATTCCGGTGGTCCAT 331 585 634 Antisense
TGGTCCATTTGCGTGTCGACGTGAA 469 543 651 Antisense
GGTAGCACCATATCTTTCATGGATC 406 505 756 Antisense
Sequence Source Affymetrix Proprietary Database