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[188641_s_at] Ank repeat

Description T16G1.9 /REP_DB=WormBase Gene ID /WP=CE20079 /TR=Q9U367 /GB=CAB63315.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Ank repeat
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 61      4grp_highest_8_8 > 09      4grp_high_8_8 > 53      6grp_highest_nonorm > 44      6grp_total > 60      4grp_total > 59      6grp_highest_sub > 03_04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 934
1 2 3 4 range
A 1481.4
(-0.3)
P 		1816.1
(3)
P 		1660.3
(1.5)
P 		1206.7
(-3)
P 		609
B 1384.4
(0.1)
P 		1675.5
(3)
P 		1673.6
(3)
P 		1066.9
(-3)
P 		609
C 1349
(0.3)
P 		1577.6
(2)
P 		1720
(3)
P 		881.7
(-3)
P 		838
avr 1404.9
(0.3) 		1689.7
(3) 		1684.6
(3) 		1051.8
(-3) 		638

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1268
1 2 3 4 5 6 range
A 1812.6
(-1)
P 		1809
(-1)
P 		1941.4
(-0.4)
P 		2578.2
(3)
P 		1554.8
(-2.4)
P 		1438
(-3)
P 		1140
B 1692.8
(-0.9)
P 		1709.2
(-0.8)
P 		2418.6
(3)
P 		2300.1
(2.4)
P 		1377.7
(-2.6)
P 		1309.8
(-3)
P 		1109
C 1455
(-2.3)
P 		1752.7
(-0.7)
P 		2149.4
(1.5)
P 		2433.7
(3)
P 		1367.3
(-2.8)
P 		1323.6
(-3)
P 		1110
avr 1653.5
(-1.4) 		1757
(-0.8) 		2169.8
(1.5) 		2437.3
(3) 		1433.3
(-2.6) 		1357.1
(-3) 		1080
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 451
1 2 3 4 range
A 539.4
(3)
P 		394.2
(0.6)
P 		434
(1.3)
P 		176.6
(-3)
P 		363
B 441.5
(3)
P 		413.8
(2.2)
P 		387.8
(1.5)
P 		227.4
(-3)
P 		214
C 446.6
(1)
P 		453.6
(1.1)
P 		599.5
(3)
P 		148.7
(-3)
P 		451
avr 475.8
(3) 		420.5
(1.9) 		473.8
(3) 		184.2
(-3) 		292

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 320
1 2 3 4 5 6 range
A 334.1
(-3)
P 		643.4
(2.8)
P 		422.8
(-1.3)
P 		653.9
(3)
P 		469.2
(-0.5)
P 		350.1
(-2.7)
P 		320
B 589
(2)
P 		568.9
(1)
P 		587.3
(1.9)
P 		609.2
(3)
P 		559.7
(0.5)
P 		488.4
(-3)
P 		121
C 539.3
(2.6)
P 		534.8
(2.3)
P 		547.1
(3)
P 		489.4
(-0.3)
P 		442.4
(-3)
P 		443.1
(-3)
P 		105
avr 487.5
(-0.7) 		582.4
(2.9) 		519.1
(0.5) 		584.2
(3) 		490.4
(-0.6) 		427.2
(-3) 		157
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188641_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13207
Sequence Type Exemplar sequence
Representative Public ID T16G1.9 NCBI
Target Description T16G1.9 /REP_DB=WormBase Gene ID /WP=CE20079 /TR=Q9U367 /GB=CAB63315.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Ank repeat
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073838(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073838 NCBI Caenorhabditis elegans T16G1.9 (T16G1.9) mRNA, complete cds. 11/11 None
SNAP00000020372 ENSEMBL cdna:SNAP chromosome:CEL140:V:12949685:12953246:-1 11/11 None
GENEFINDER00000020384 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12949685:12953246:-1 11/11 None
T16G1.9 ENSEMBL cdna:known chromosome:CEL140:V:12949407:12953248:-1 gene:T16G1.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12949684-12953246(-) 100.0 100.0
Public Domain and Genome References
Gene Title Ank repeat
Ensembl T16G1.9
Entrez Gene 179778 Entrez gene
SwissProt Q9U367 EMBL-EBI
WormBase CE20079 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63315 Hypothetical protein T16G1.9 [Caenorhabditis elegans] ref|NP_506239.1| T16G1.9 [Caenorhabditis elegans] 0.0
blast CAE64711 Hypothetical protein CBG09497 [Caenorhabditis briggsae] 0.0
blast XP_395787 PREDICTED: similar to Hypothetical protein CBG09497 [Apis mellifera] 1.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR002110 EMBL-EBI Ankyrin 0.039
Pfam IPR002110 EMBL-EBI Ankyrin 0.0016
Pfam IPR002110 EMBL-EBI Ankyrin 2.1E-7
Sequence
Target Sequence 
>C. ELEGANS:188641_S_AT
aacgctgacagttcatctacatcggaaactacacttttcggaatgtctgcaaacaagaag
atgccaatttcagtttttgttgagatgattttgaatccagaaaatatgaatatggaacga
ttaacccctgtcgtgttcaaaaaagcccgtatcgagttgaaacgaacttcatctgtcttg
gacgctaccagcaaacttttaccatatagttacgatctcgctctagttttggaagagatt
cgtctggttaccgaattgatggttctcgtaagcaagcttggtcaatatatgtgtgtctat
ggaagccaaccaatcgatcggaagaaaagcttcgaagaagggttaccgtattcaccagga
cgtgtaggagttattaacttgccacctgcaattcgcactgatttggctaatacaatgcta
cgcgtccgtggccaatttcaacatgtttggttatcccgatcaattccaagtactctgcag
aatgctctcaaaatgttcgataatttgttcagagcactattgcctcatgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGCTGACAGTTCATCTACATCGG 537 145 2290 Antisense
ATGGAACGATTAACCCCTGTCGTGT 28 53 2401 Antisense
GAACTTCATCTGTCTTGGACGCTAC 225 349 2453 Antisense
GGACGCTACCAGCAAACTTTTACCA 543 521 2469 Antisense
TTACGATCTCGCTCTAGTTTTGGAA 15 681 2499 Antisense
GGAAGCCAACCAATCGATCGGAAGA 374 529 2590 Antisense
GGTTACCGTATTCACCAGGACGTGT 400 493 2630 Antisense
TTAACTTGCCACCTGCAATTCGCAC 63 683 2663 Antisense
CGTCCGTGGCCAATTTCAACATGTT 76 245 2712 Antisense
GGTTATCCCGATCAATTCCAAGTAC 149 507 2738 Antisense
GTTCAGAGCACTATTGCCTCATGAT 183 445 2796 Antisense
Sequence Source Affymetrix Proprietary Database