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[188640_at] Esterase

Description F55D10.3 /REP_DB=WormBase Gene ID /WP=CE04659 /TR=Q20826 /GB=AAA81727.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=Esterase
Cluster 6grp_high1_10_10 > 38      4grp_high_8_8 > 06      6grp_total > 37      4grp_total > 03      6grp_cgc > 26      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 752
1 2 3 4 range
A 367.8
(-2.5)
P 		339.6
(-2.7)
P 		308.3
(-3)
P 		1038.5
(3)
P 		730
B 428.3
(-1.7)
P 		321.4
(-2.7)
P 		286.9
(-3)
A 		956.4
(3)
P 		670
C 342.6
(-2.4)
P 		289.6
(-3)
A 		370.8
(-2.1)
P 		833.8
(3)
P 		544
avr 379.6
(-2.4) 		316.9
(-3) 		322
(-3) 		942.9
(3) 		626

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 289
1 2 3 4 5 6 range
A 401.9
(-0.4)
P 		435.1
(0.5)
P 		297.8
(-3)
P 		352.3
(-1.6)
P 		359.5
(-1.4)
P 		534.6
(3)
P 		237
B 586.3
(3)
P 		435.9
(-0.1)
P 		362.8
(-1.6)
P 		439.2
(-0)
M 		296.9
(-3)
P 		375.8
(-1.4)
P 		289
C 578.8
(3)
P 		389.6
(-1.6)
P 		480.8
(0.6)
A 		543.5
(2.1)
P 		330.7
(-3)
P 		485.4
(0.7)
P 		248
avr 522.3
(3) 		420.2
(-0.2) 		380.5
(-1.4) 		445
(0.6) 		329
(-3) 		465.3
(1.2) 		193
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 137
1 2 3 4 range
A 133.9
(1.6)
P 		73.7
(-3)
P 		80.6
(-2.5)
P 		152
(3)
P 		78
B 136.6
(0.1)
P 		79.4
(-2.4)
P 		66.5
(-3)
A 		203.8
(3)
P 		137
C 113.4
(0.2)
P 		83.2
(-3)
A 		129.2
(1.8)
P 		140.6
(3)
P 		57
avr 128
(0.4) 		78.8
(-3) 		92.1
(-2.1) 		165.5
(3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 150
1 2 3 4 5 6 range
A 74.1
(-2.4)
P 		154.7
(3)
P 		64.9
(-3)
P 		89.4
(-1.4)
P 		108.5
(-0.1)
P 		130.1
(1.4)
P 		90
B 204
(3)
P 		145.1
(-0)
P 		88.1
(-3)
P 		116.3
(-1.5)
M 		120.6
(-1.3)
P 		140.1
(-0.3)
P 		116
C 214.5
(3)
P 		118.9
(-2.3)
P 		122.4
(-2.1)
A 		109.3
(-2.9)
P 		107
(-3)
P 		162.5
(0.1)
P 		108
avr 164.2
(3) 		139.6
(1) 		91.8
(-3) 		105
(-1.9) 		112
(-1.3) 		144.2
(1.3) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188640_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16671
Sequence Type Exemplar sequence
Representative Public ID F55D10.3 NCBI
Target Description F55D10.3 /REP_DB=WormBase Gene ID /WP=CE04659 /TR=Q20826 /GB=AAA81727.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=Esterase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076406(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076406 NCBI Caenorhabditis elegans F55D10.3 (Esterase) mRNA, complete cds. 11/11 None
GENEFINDER00000004388 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4712265:4714825:1 11/11 None
SNAP00000004375 ENSEMBL cdna:SNAP chromosome:CEL140:X:4712291:4714825:1 11/11 None
F55D10.3 ENSEMBL cdna:known chromosome:CEL140:X:4712248:4715047:1 gene:F55D10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4712265-4714826(+) 100.0 100.0
Public Domain and Genome References
Gene Title Esterase
Gene Symbol glit-1
Ensembl F55D10.3
Entrez Gene 180747 Entrez gene
SwissProt Q20826 EMBL-EBI
WormBase CE04659 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1624203_S_AT Gliotactin dm
DROSGENOME1:143221_AT Gliotactin dm
Protein Similarities
Method ID Description E-Value
blast AAA81727 Gliotactin (drosophila neuroligin-like) homolog protein 1 [Caenorhabditis elegans] ref|NP_508807.1| F55D10.3 [Caenorhabditis elegans] 0.0
blast CAE68638 Hypothetical protein CBG14528 [Caenorhabditis briggsae] 0.0
blast EAL33230 GA17762-PA [Drosophila pseudoobscura] 3.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.0E-126
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508807.1 1 663-685
F55D10.3 1 663-685
GENEFINDER00000004388 1 663-685
SNAP00000004375 1 655-677
Sequence
Target Sequence 
>C. ELEGANS:188640_AT
tgatgtttggctatccgtttttaccggacgagctgagaccgattggtctgcgaggcataa
attttacggatacagatagaaacgcgagcaggacgttttccaacatcatacgtcgattca
gttatcatcagaacccaaattttcaatttgatggcagctgggcagcatacgaaccaaggc
gtcattggtacattaactttaactacacacatgaagaagactggaagattcctggaactc
ttgcaagagactatcgctatcaagatgttgcattctggaatgagtacatccctgcattgg
tgaactacatgacaacgacgttttcccctgaaaatgttgcgtaccgacgagaaatcatgg
ttttcaaatggatcactggagtcaacgtcatcatcatcgctctactgatagtacttgctg
gcgcgtttggatatatggtttggggaaacaaggaggacgaggaggcggcttataaagcag
aaaaccaccaactcgtcgaataccgggacactggtcactcagtgtcggatgctactattt
cttcacgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATGTTTGGCTATCCGTTTTTACC 302 567 1622 Antisense
CCGGACGAGCTGAGACCGATTGGTC 575 263 1645 Antisense
GCGAGCAGGACGTTTTCCAACATCA 547 289 1705 Antisense
GCAGCTGGGCAGCATACGAACCAAG 30 313 1775 Antisense
GAGTACATCCCTGCATTGGTGAACT 550 399 1903 Antisense
ACATGACAACGACGTTTTCCCCTGA 228 101 1928 Antisense
ATCACTGGAGTCAACGTCATCATCA 175 29 1993 Antisense
TAGTACTTGCTGGCGCGTTTGGATA 349 651 2030 Antisense
CGAATACCGGGACACTGGTCACTCA 216 253 2118 Antisense
TGGTCACTCAGTGTCGGATGCTACT 29 551 2133 Antisense
TCGGATGCTACTATTTCTTCACGGA 698 605 2146 Antisense
Sequence Source Affymetrix Proprietary Database