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[188639_at] SET domain

Description C47E8.8 /REP_DB=WormBase Gene ID /WP=CE23602 /TR=Q18690 /GB=CAB57906.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=SET domain
Cluster 6grp_total > 96      4grp_total > 17      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 4.3
(-2.9)
A 		3.4
(-3)
A 		21.6
(-1.3)
A 		66.6
(3)
A 		63
B 5.8
(-3)
A 		26
(3)
A 		10
(-1.8)
A 		6.8
(-2.7)
A 		20
C 16.6
(3)
A 		11.3
(-0.9)
A 		8.5
(-3)
A 		14.3
(1.3)
A 		8
avr 8.9
(-3) 		13.6
(-1.6) 		13.4
(-1.7) 		29.2
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 3.7
(-3)
A 		3.2
(-3)
A 		8.4
(-2.7)
A 		11.4
(-2.5)
A 		89
(2.3)
A 		99.7
(3)
P 		97
B 9.5
(-3)
A 		16.6
(-2.4)
A 		48
(0.1)
A 		58.6
(0.9)
A 		40.1
(-0.6)
A 		85.2
(3)
P 		76
C 4.1
(-3)
A 		30.6
(-1)
A 		9.4
(-2.6)
A 		47
(0.2)
A 		38.5
(-0.4)
A 		84
(3)
P 		80
avr 5.8
(-3) 		16.8
(-2.2) 		21.9
(-1.8) 		39
(-0.6) 		55.9
(0.6) 		89.6
(3) 		84
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.6
(-2.4)
A 		0.7
(-3)
A 		5.6
(0.3)
A 		9.7
(3)
A 		9
B 1.9
(-2.5)
A 		6.4
(3)
A 		2.3
(-2)
A 		1.5
(-3)
A 		5
C 5.5
(3)
A 		3.3
(-1.3)
A 		3
(-1.8)
A 		2.4
(-3)
A 		3
avr 3
(-3) 		3.5
(-1) 		3.6
(-0.6) 		4.5
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 0.7
(-3)
A 		1.1
(-2.9)
A 		1.8
(-2.7)
A 		2.9
(-2.5)
A 		26.9
(3)
A 		24.3
(2.4)
P 		26
B 3.3
(-3)
A 		5.5
(-2.5)
A 		11.7
(-1.2)
A 		15.5
(-0.4)
A 		16.3
(-0.3)
A 		31.8
(3)
P 		29
C 1.5
(-3)
A 		9.3
(-1.2)
A 		2.4
(-2.8)
A 		9.5
(-1.2)
A 		12.5
(-0.5)
A 		28.1
(3)
P 		27
avr 1.8
(-3) 		5.3
(-2.2) 		5.3
(-2.2) 		9.3
(-1.3) 		18.6
(0.8) 		28.1
(3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188639_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12573
Sequence Type Exemplar sequence
Representative Public ID C47E8.8 NCBI
Target Description C47E8.8 /REP_DB=WormBase Gene ID /WP=CE23602 /TR=Q18690 /GB=CAB57906.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=SET domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074228(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074228 NCBI Caenorhabditis elegans C47E8.8 (C47E8.8) mRNA, complete cds. 11/11 None
SNAP00000001282 ENSEMBL cdna:SNAP chromosome:CEL140:V:14708703:14710054:1 11/11 None
GENEFINDER00000001292 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14708354:14711972:1 11/11 None
C47E8.8 ENSEMBL cdna:known chromosome:CEL140:V:14699608:14710181:1 gene:C47E8.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14699607-14710054(+) 100.0 100.0
Public Domain and Genome References
Gene Title SET domain
Ensembl C47E8.8
Entrez Gene 179973 Entrez gene
SwissProt Q18690 EMBL-EBI
WormBase CE23602 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99796 Hypothetical protein C47E8.8 [Caenorhabditis elegans] emb|CAB57906.1| Hypothetical protein C47E8.8 [Caenorhabditis elegans] ref|NP_506629.1| C47E8.8 [Caenorhabditis elegans] 0.0
blast CAB60770 Hypothetical protein Y57A10A.1 [Caenorhabditis elegans] ref|NP_496581.1| Y57A10A.1 [Caenorhabditis elegans] 0.0
blast T31623 hypothetical protein Y57A10A.a - Caenorhabditis elegans 0.0
blast CAA99796 Hypothetical protein C47E8.8 [Caenorhabditis elegans] emb|CAB57906.1| Hypothetical protein C47E8.8 [Caenorhabditis elegans] ref|NP_506629.1| C47E8.8 [Caenorhabditis elegans] 2.0E-92
blast CAA99796 Hypothetical protein C47E8.8 [Caenorhabditis elegans] emb|CAB57906.1| Hypothetical protein C47E8.8 [Caenorhabditis elegans] ref|NP_506629.1| C47E8.8 [Caenorhabditis elegans] 8.0E-88
blast CAB60770 Hypothetical protein Y57A10A.1 [Caenorhabditis elegans] ref|NP_496581.1| Y57A10A.1 [Caenorhabditis elegans] 6.0E-46
blast T31623 hypothetical protein Y57A10A.a - Caenorhabditis elegans 1.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR006570 EMBL-EBI SPK 4.8E-50
Pfam IPR001214 EMBL-EBI Nuclear protein SET 6.0E-25
Sequence
Target Sequence 
>C. ELEGANS:188639_AT
aaataccactacttctgatcattccagaattgaaactgatgatattcaatttgaaggagt
atatccaattgaaccctgtgctcctgtatcttctggaatgccgattctttctgtgaaaac
tgagccaagaagcactgaacatttgagcttctcctatgagaacgtggcatacacccaagc
ggaattctcttcgacgacctacgcatgtccagaaccaacagagacaatcagccttcacga
ttttttgacacttttacgtcgccttcttattctgttgcaatgcgaagagctcgcggagct
cgcaagaaatatcaagacaattagcgaaactggaggcgatgaaaaaattccaacgaatcg
aatcaattcggtgctcgacgtggcattctacaaaattcagcgaaaattcgtcgtgacgtc
atctcccaattcgacgagcgcccgagaattcctgaaacttttcaagaatctcctaaattt
gttggaatctcgagcagtcgacatgctcttgggcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATACCACTACTTCTGATCATTCC 578 115 4425 Antisense
TATATCCAATTGAACCCTGTGCTCC 551 661 4484 Antisense
GTGCTCCTGTATCTTCTGGAATGCC 107 479 4502 Antisense
GCACTGAACATTTGAGCTTCTCCTA 600 315 4556 Antisense
TACACCCAAGCGGAATTCTCTTCGA 132 643 4594 Antisense
CCTACGCATGTCCAGAACCAACAGA 93 269 4622 Antisense
TCAGCCTTCACGATTTTTTGACACT 246 625 4652 Antisense
GCCTTCTTATTCTGTTGCAATGCGA 40 283 4685 Antisense
AAATTCGTCGTGACGTCATCTCCCA 679 115 4828 Antisense
AGCGCCCGAGAATTCCTGAAACTTT 304 83 4861 Antisense
CGAGCAGTCGACATGCTCTTGGGCC 452 249 4915 Antisense
Sequence Source Affymetrix Proprietary Database