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[188638_s_at] kinesins

Description M01E11.6 /REP_DB=WormBase Gene ID /WP=CE12298 /TR=P91400 /GB=AAB37830.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=kinesins
Cluster 6grp_high1_10_10 > 98      4grp_highest_8_8 > 14      4grp_high_8_8 > 22      6grp_total > 98      4grp_total > 16      6grp_cgc > 69      6grp_high1_sub > In      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 29.3
(-3)
P 		53.6
(-1.8)
P 		64.3
(-1.3)
P 		152.4
(3)
P 		123
B 55.3
(-2.8)
P 		68
(-2)
P 		52.3
(-3)
P 		150.1
(3)
P 		98
C 56
(-3)
P 		68.5
(-1.6)
P 		107.3
(2.8)
P 		109.5
(3)
P 		54
avr 46.9
(-3) 		63.4
(-1.9) 		74.6
(-1.2) 		137.3
(3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 733
1 2 3 4 5 6 range
A 92
(-2.8)
P 		70.7
(-3)
P 		67.7
(-3)
P 		190.2
(-1.8)
P 		512.9
(1.3)
P 		687.4
(3)
P 		620
B 51.9
(-3)
P 		88.4
(-2.7)
P 		56.8
(-3)
P 		225.5
(-1.6)
P 		582.2
(1.4)
P 		778.3
(3)
P 		726
C 45.4
(-3)
A 		69.3
(-2.8)
P 		74.3
(-2.7)
P 		151.5
(-2.1)
P 		554.1
(1.5)
P 		723.9
(3)
P 		679
avr 63.1
(-3) 		76.1
(-2.9) 		66.3
(-3) 		189.1
(-1.9) 		549.7
(1.4) 		729.9
(3) 		667
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 10.7
(-3)
P 		11.6
(-2.5)
P 		16.8
(0.2)
P 		22.3
(3)
P 		12
B 17.6
(-1.3)
P 		16.8
(-1.6)
P 		12.1
(-3)
P 		32
(3)
P 		20
C 18.5
(-3)
P 		19.7
(-2.6)
P 		37.4
(3)
P 		18.5
(-3)
P 		19
avr 15.6
(-3) 		16
(-2.7) 		22.1
(1.5) 		24.3
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 276
1 2 3 4 5 6 range
A 17
(-2.9)
P 		25.1
(-2.6)
P 		14.7
(-3)
P 		48.2
(-1.7)
P 		154.8
(2.5)
P 		167.4
(3)
P 		153
B 18.1
(-2.9)
P 		29.4
(-2.7)
P 		13.8
(-3)
P 		59.7
(-2)
P 		236.5
(1.8)
P 		290.2
(3)
P 		276
C 16.8
(-3)
A 		21.1
(-2.9)
P 		18.9
(-2.9)
P 		30.5
(-2.6)
P 		179.3
(1.3)
P 		242.3
(3)
P 		226
avr 17.3
(-3) 		25.2
(-2.7) 		15.8
(-3) 		46.1
(-2.2) 		190.2
(1.8) 		233.3
(3) 		218
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188638_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1700
Sequence Type Exemplar sequence
Representative Public ID M01E11.6 NCBI
Target Description M01E11.6 /REP_DB=WormBase Gene ID /WP=CE12298 /TR=P91400 /GB=AAB37830.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=kinesins
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059232(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059232 NCBI Caenorhabditis elegans M01E11.6 (kinesins) mRNA, complete cds. 11/11 None
SNAP00000002374 ENSEMBL cdna:SNAP chromosome:CEL140:I:5577196:5579184:-1 11/11 None
GENEFINDER00000002383 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5577196:5579184:-1 11/11 None
M01E11.6 ENSEMBL cdna:known chromosome:CEL140:I:5577058:5579302:-1 gene:M01E11.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9520579-9522568(+) 93.82 93.82
chrI:5577195-5579184(-) 100.0 100.0
Public Domain and Genome References
Gene Title kinesins
Gene Symbol klp-15
Ensembl M01E11.6
Entrez Gene 172213 Entrez gene
SwissProt P91400 EMBL-EBI
WormBase CE12298 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5875 microtubule associated complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3774 motor activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37830 Kinesin-like protein protein 15 [Caenorhabditis elegans] ref|NP_491633.1| M01E11.6 [Caenorhabditis elegans] 0.0
blast BAA92263.2 kinesin like protein-15 [Caenorhabditis elegans] 0.0
blast CAB02839 Hypothetical protein C41G7.2 [Caenorhabditis elegans] ref|NP_492527.1| Kinesin-Like Protein family member (klp-16) [Caenorhabditis elegans] dbj|BAA92264.1| kinesin like protein [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001752 EMBL-EBI Kinesin, motor region 6.7E-115
Sequence
Target Sequence 
>C. ELEGANS:188638_S_AT
ccaatgtctcggatgtggctagacttcttcgtgtagcagacggtggcaggaagacggcgg
cgacaaagtgcaatgagagctcgtctcgttcgcacgccgtttatatgtggaagattacag
ctcatcagccatcaactggaatttcaacatcgtgccagctcaaacttgtggatctcgcag
gatccgaacgtgccaaggagtctggtgtcagtggcgaccagttcaaggagatgactaata
tcaaccagtcgttgtctatccttcagatgtgcatcagccagcaaagatcccagaagggac
atgtttcatatcgcgacagcaaactgacacaagtgctgatggactgcttgggacgtggca
actcgaagactatggttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAATGTCTCGGATGTGGCTAGACT 161 277 1253 Antisense
TCGGATGTGGCTAGACTTCTTCGTG 699 605 1261 Antisense
GGCTAGACTTCTTCGTGTAGCAGAC 644 537 1269 Antisense
ACGGCGGCGACAAAGTGCAATGAGA 93 97 1306 Antisense
ACAAAGTGCAATGAGAGCTCGTCTC 267 111 1315 Antisense
GTGGAAGATTACAGCTCATCAGCCA 367 491 1359 Antisense
GATTACAGCTCATCAGCCATCAACT 238 429 1365 Antisense
TCAACTGGAATTTCAACATCGTGCC 436 631 1384 Antisense
TGGAATTTCAACATCGTGCCAGCTC 34 547 1389 Antisense
ATCGTGCCAGCTCAAACTTGTGGAT 613 35 1401 Antisense
GTGGCAACTCGAAGACTATGGTTGT 543 489 1607 Antisense
Sequence Source Affymetrix Proprietary Database