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[188634_s_at] innexin

Description F08G12.10 /REP_DB=WormBase Gene ID /WP=CE26709 /GEN=inx-2 /TR=SW:Q9U3K5 /GB=CAB54206.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 67      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_total > 68      4grp_total > 04      6grp_cgc > 38      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 133.3
(0.6)
P 		113
(-3)
P 		146.4
(3)
P 		133.4
(0.7)
P 		33
B 128.6
(-0.4)
P 		74.1
(-3)
P 		90.6
(-2.2)
P 		197.6
(3)
P 		124
C 117
(-2.3)
P 		120.3
(-2.1)
P 		104.2
(-3)
P 		210.2
(3)
P 		106
avr 126.3
(-1.2) 		102.5
(-3) 		113.7
(-2.1) 		180.4
(3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1065
1 2 3 4 5 6 range
A 261.2
(-1.8)
P 		135.4
(-2.5)
P 		69.8
(-2.9)
P 		47.3
(-3)
A 		157
(-2.4)
P 		1112.5
(3)
P 		1065
B 204.4
(-2.2)
P 		91.8
(-3)
P 		124.4
(-2.8)
P 		124.8
(-2.8)
P 		156.9
(-2.6)
P 		985.7
(3)
P 		894
C 194.9
(-2.4)
P 		113
(-3)
P 		146.1
(-2.8)
P 		123.7
(-2.9)
P 		179.5
(-2.5)
P 		951.6
(3)
P 		839
avr 220.2
(-2.2) 		113.4
(-2.9) 		113.4
(-2.9) 		98.6
(-3) 		164.5
(-2.6) 		1016.6
(3) 		918
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 48.5
(3)
P 		24.5
(-2)
P 		38.3
(0.9)
P 		19.5
(-3)
P 		29
B 41
(2.7)
P 		18.3
(-3)
P 		21
(-2.3)
P 		42.1
(3)
P 		24
C 38.7
(3)
P 		34.6
(-3)
P 		36.3
(-0.5)
P 		35.4
(-1.8)
P 		4
avr 42.7
(3) 		25.8
(-3) 		31.9
(-0.8) 		32.3
(-0.7) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 356
1 2 3 4 5 6 range
A 48.1
(-2.2)
P 		48.1
(-2.2)
P 		15.2
(-2.9)
P 		12
(-3)
A 		47.4
(-2.2)
P 		270.9
(3)
P 		259
B 71.1
(-2.3)
P 		30.5
(-3)
P 		30.2
(-3)
P 		33
(-3)
P 		63.7
(-2.4)
P 		367.5
(3)
P 		337
C 72.2
(-2)
P 		34.5
(-2.8)
P 		37.2
(-2.7)
P 		24.9
(-3)
P 		58.1
(-2.3)
P 		318.6
(3)
P 		294
avr 63.8
(-2.2) 		37.7
(-2.7) 		27.5
(-2.9) 		23.3
(-3) 		56.4
(-2.3) 		319
(3) 		296
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188634_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16646
Sequence Type Exemplar sequence
Representative Public ID F08G12.10 NCBI
Target Description F08G12.10 /REP_DB=WormBase Gene ID /WP=CE26709 /GEN=inx-2 /TR=SW:Q9U3K5 /GB=CAB54206.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077484(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077484 NCBI Caenorhabditis elegans F08G12.10 (innexin) mRNA, complete cds. 11/11 A 
SNAP00000008599 ENSEMBL cdna:SNAP chromosome:CEL140:X:11295107:11296653:-1 11/11 None
GENEFINDER00000008631 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11295107:11296653:-1 11/11 None
F08G12.10 ENSEMBL cdna:known chromosome:CEL140:X:11294886:11296655:-1 gene:F08G12.10 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11295106-11296737(-) 100.0 100.0
Public Domain and Genome References
Gene Title innexin
Gene Symbol inx-2
Ensembl F08G12.10
Entrez Gene 181318 Entrez gene
SwissProt Q9U3K5 EMBL-EBI
WormBase CE26709 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5921 gap junction inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB54206 Hypothetical protein F08G12.10 [Caenorhabditis elegans] ref|NP_509885.1| F08G12.10 [Caenorhabditis elegans] gb|AAG50240.1| innexin [Caenorhabditis elegans] sp|Q9U3K5|INX2_CAEEL Innexin-2 0.0
blast T20594 hypothetical protein F08G12.10 - Caenorhabditis elegans 0.0
blast CAE70668 Hypothetical protein CBG17376 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000990 EMBL-EBI Innexin 9.3E-37
Pfam IPR000990 EMBL-EBI Innexin 9.6E-27
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509885.1 4 31-53,103-125,177-199,271-293
F08G12.10 4 31-53,103-125,177-199,271-293
SNAP00000008599 4 31-53,103-125,177-199,271-293
GENEFINDER00000008631 4 31-53,103-125,177-199,271-293
Sequence
Target Sequence 
>C. ELEGANS:188634_S_AT
cttcccccgtattgtactttgtgatttcaaagttcgcaatctcggacaacagcatcaaca
cacagtttcttgcatcatgattctcaatatgattattgaaaagctttatatctgcttcta
cttttggctcatctttgtgttcgttgttaccaccgctggaatgatccattttgctttcca
gattctcttcagaagacacagccttattcccacaaatttgaacaacaagaataaaatgaa
cccaacgcgctcccacgaatttatcaaggactatctcaacttcgatggatgtcttctcct
cacatacgttgacgctcagtttggtgctttcagaacttctcaagtcattgatggacttgt
tcaccggtttac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCCCCCGTATTGTACTTTGTGAT 22 219 801 Antisense
TTCGCAATCTCGGACAACAGCATCA 133 693 833 Antisense
GCATCAACACACAGTTTCTTGCATC 277 309 852 Antisense
ATATCTGCTTCTACTTTTGGCTCAT 268 21 908 Antisense
GGCTCATCTTTGTGTTCGTTGTTAC 29 539 926 Antisense
TGTTACCACCGCTGGAATGATCCAT 370 561 945 Antisense
TGATCCATTTTGCTTTCCAGATTCT 698 565 962 Antisense
TCAGAAGACACAGCCTTATTCCCAC 674 621 989 Antisense
AACTTCGATGGATGTCTTCTCCTCA 121 139 1078 Antisense
CGTTGACGCTCAGTTTGGTGCTTTC 515 247 1107 Antisense
TTGATGGACTTGTTCACCGGTTTAC 655 699 1148 Antisense
Sequence Source Affymetrix Proprietary Database