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[188630_at] calmodulin

Description C18E9.1 /REP_DB=WormBase Gene ID /WP=CE05293 /TR=Q18092 /GB=CAA93852.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=calmodulin
Cluster 6grp_highest_10_10 > 45      6grp_high1_10_10 > 30      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 32      6grp_total > 44      4grp_total > 13      6grp_cgc > 82      6grp_high1_sub > 03      6grp_cgc_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2114
1 2 3 4 range
A 1776.5
(0.7)
P 		985.1
(-2)
P 		672.2
(-3)
P 		2469.7
(3)
P 		1798
B 1817.1
(0.2)
P 		1107.1
(-2.1)
P 		819.9
(-3)
P 		2699.8
(3)
P 		1880
C 2059
(0.9)
P 		983.8
(-2.2)
P 		721.5
(-3)
P 		2785.8
(3)
P 		2064
avr 1884.2
(0.6) 		1025.3
(-2.1) 		737.9
(-3) 		2651.8
(3) 		1914

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1259
1 2 3 4 5 6 range
A 987.5
(-2.1)
P 		1420.2
(0.7)
P 		1775.2
(3)
P 		1012
(-1.9)
P 		847.4
(-3)
P 		965.4
(-2.2)
P 		928
B 1366.3
(-0.3)
P 		1552.6
(0.6)
P 		2030.2
(3)
P 		1060.7
(-1.8)
P 		829.2
(-3)
P 		1220.6
(-1)
P 		1201
C 1320.1
(1.6)
P 		1484.4
(3)
P 		1114.6
(-0.1)
P 		1349.3
(1.9)
P 		770.9
(-3)
P 		1134.4
(0.1)
P 		714
avr 1224.6
(-0) 		1485.7
(1.9) 		1640
(3) 		1140.7
(-0.6) 		815.8
(-3) 		1106.8
(-0.9) 		824
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 506
1 2 3 4 range
A 646.8
(3)
P 		213.8
(-2.5)
P 		175.7
(-3)
P 		361.5
(-0.6)
P 		471
B 579.5
(3)
P 		273.4
(-1.7)
P 		190
(-3)
P 		575.3
(2.9)
P 		390
C 681.6
(3)
P 		282.9
(-2.6)
P 		251.5
(-3)
P 		469.7
(0)
P 		430
avr 636
(3) 		256.7
(-2.3) 		205.7
(-3) 		468.8
(0.7) 		430

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 335
1 2 3 4 5 6 range
A 182
(-3)
P 		505.1
(3)
P 		386.6
(0.8)
P 		256.7
(-1.6)
P 		255.7
(-1.6)
P 		235
(-2)
P 		323
B 475.4
(1.9)
P 		516.8
(3)
P 		493
(2.4)
P 		280.9
(-3)
P 		336.9
(-1.6)
P 		455.1
(1.4)
P 		236
C 489.3
(3)
P 		452.9
(2.1)
P 		283.7
(-2.1)
P 		271.3
(-2.5)
P 		249.4
(-3)
P 		379.8
(0.3)
P 		240
avr 382.2
(0) 		491.6
(3) 		387.8
(0.2) 		269.6
(-3) 		280.7
(-2.7) 		356.6
(-0.6) 		222
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188630_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3851
Sequence Type Exemplar sequence
Representative Public ID C18E9.1 NCBI
Target Description C18E9.1 /REP_DB=WormBase Gene ID /WP=CE05293 /TR=Q18092 /GB=CAA93852.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=calmodulin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063505(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063505 NCBI Caenorhabditis elegans C18E9.1 (calmodulin) mRNA, complete cds. 11/11 None
C18E9.1 ENSEMBL cdna:known chromosome:CEL140:II:8960644:8961480:1 gene:C18E9.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035638 5/11 Cross Hyb Matching Probes None
GENEFINDER00000035658 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8960640-8961467(+) 100.0 100.0
Public Domain and Genome References
Gene Title calmodulin
Gene Symbol cal-2
Ensembl C18E9.1
Entrez Gene 182789 Entrez gene
SwissProt Q18092 EMBL-EBI
WormBase CE34702 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93852 Hypothetical protein C18E9.1 [Caenorhabditis elegans] emb|CAD54672.1| calmodulin-like protein [Caenorhabditis elegans] ref|NP_495906.2| C18E9.1 [Caenorhabditis elegans] 1.0E-78
blast CAE59768 Hypothetical protein CBG03220 [Caenorhabditis briggsae] 4.0E-77
blast CAA27814 cal-1 [Caenorhabditis elegans] sp|P04630|CALL_CAEEL Calmodulin-like protein 4.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 1.1E-8
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 8.1E-9
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 4.2E-10
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 4.4E-7
Sequence
Target Sequence 
>C. ELEGANS:188630_AT
aggggttgcaatgcgttctttgggccaaaatccaactgagcaggagcttcttgatatggt
caatgaggtagatatcgatggaagtggaacaatagattttggagaattttgtcaaatgat
gaaaagaatgaacaaagaaaatgacagtgagatgattcgagaagcatttcgagtttttga
tagagatggaaatggattcattactgctgatgagttccgttattttatgactcatatggg
tgatcaattcagtgaccaagaagttgatgaaattattgcagagatcgatattgatggtga
cggacaggtaggaaatataaatttgttcctaaacttggattatctaagtatttacagatc
gattatgaagaattcgcctccacattctccgcttaaaatattaaagaatccaaaaataac
tattcatgtacagtcaaaacatttctcatcgggtcgcgattttacttttgaatcaacaat
tccaccgaatctctcgctttgtctgaatgactatatatttgttttcatacttttaaagaa
gcttaatgctcaagcttattgtatctaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGGGTTGCAATGCGTTCTTTGGGC 26 59 183 Antisense
GCGTTCTTTGGGCCAAAATCCAACT 426 291 195 Antisense
AATCCAACTGAGCAGGAGCTTCTTG 456 167 211 Antisense
ATTACTGCTGATGAGTTCCGTTATT 470 13 382 Antisense
ATGGGTGATCAATTCAGTGACCAAG 307 51 418 Antisense
CTCCACATTCTCCGCTTAAAATATT 169 237 560 Antisense
GTCAAAACATTTCTCATCGGGTCGC 414 463 615 Antisense
TCGGGTCGCGATTTTACTTTTGAAT 279 605 631 Antisense
ATCAACAATTCCACCGAATCTCTCG 362 25 654 Antisense
GAATCTCTCGCTTTGTCTGAATGAC 165 329 669 Antisense
AATGCTCAAGCTTATTGTATCTACA 610 165 727 Antisense
Sequence Source Affymetrix Proprietary Database