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[188629_at] peptidase

Description F48A9.3 /REP_DB=WormBase Gene ID /WP=CE10720 /TR=O01566 /GB=AAB93344.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=peptidase
Cluster 6grp_total > 59      4grp_total > 02      6grp_cgc > 29      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 4.6
(-3)
A 		8.1
(-2.7)
A 		8.8
(-2.7)
A 		78.4
(3)
A 		74
B 28.8
(-0.3)
A 		4.6
(-3)
A 		6.5
(-2.8)
A 		58.9
(3)
A 		54
C 3.2
(-3)
A 		11.1
(-2.2)
A 		19.2
(-1.4)
A 		64.9
(3)
A 		62
avr 12.2
(-2.6) 		7.9
(-3) 		11.5
(-2.6) 		67.4
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 10.7
(-1.5)
A 		30.3
(3)
A 		6.4
(-2.5)
A 		4.1
(-3)
A 		22
(1.1)
A 		22
(1.1)
A 		26
B 40.9
(1.9)
A 		8.2
(-2.2)
A 		2
(-3)
A 		6.2
(-2.5)
A 		33.9
(1)
A 		49.9
(3)
A 		48
C 9.5
(-1.5)
A 		8.1
(-1.7)
A 		2.3
(-2.9)
A 		32.3
(3)
A 		1.7
(-3)
A 		27.5
(2.1)
A 		31
avr 20.4
(0.4) 		15.5
(-0.6) 		3.6
(-3) 		14.2
(-0.8) 		19.2
(0.2) 		33.1
(3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.7
(-3)
A 		1.8
(-2.9)
A 		2.3
(-2.6)
A 		11.5
(3)
A 		10
B 9.2
(1.3)
A 		1.1
(-3)
A 		1.5
(-2.8)
A 		12.5
(3)
A 		11
C 1.1
(-3)
A 		3.2
(-1.7)
A 		6.7
(0.4)
A 		10.9
(3)
A 		10
avr 4
(-1.8) 		2
(-3) 		3.5
(-2.1) 		11.6
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 2
(-2.4)
A 		10.8
(3)
A 		1.4
(-2.8)
A 		1
(-3)
A 		6.6
(0.4)
A 		5.4
(-0.3)
A 		10
B 14.2
(1.5)
A 		2.7
(-2.3)
A 		0.5
(-3)
A 		1.7
(-2.6)
A 		13.8
(1.4)
A 		18.6
(3)
A 		18
C 3.5
(-0.9)
A 		2.5
(-1.6)
A 		0.6
(-2.9)
A 		6.5
(1.1)
A 		0.5
(-3)
A 		9.2
(3)
A 		9
avr 6.6
(0.4) 		5.3
(-0.4) 		0.8
(-3) 		3.1
(-1.7) 		7
(0.6) 		11.1
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188629_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1752
Sequence Type Exemplar sequence
Representative Public ID F48A9.3 NCBI
Target Description F48A9.3 /REP_DB=WormBase Gene ID /WP=CE10720 /TR=O01566 /GB=AAB93344.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=peptidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059497(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059497 NCBI Caenorhabditis elegans F48A9.3 (peptidase) mRNA, complete cds. 11/11 None
F48A9.3 ENSEMBL cdna:known chromosome:CEL140:I:6593812:6596016:1 gene:F48A9.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025390 8/11 Cross Hyb Matching Probes None
GENEFINDER00000025392 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6593740-6595945(+) 100.0 100.0
Public Domain and Genome References
Gene Title peptidase
Gene Symbol try-6
Ensembl F48A9.3
Entrez Gene 185959 Entrez gene
SwissProt O01566 EMBL-EBI
WormBase CE10720 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4263 chymotrypsin activity inferred from electronic annotation QuickGO AmiGO
4295 trypsin activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB93344 Trypsin-like protease protein 6 [Caenorhabditis elegans] ref|NP_491898.1| F48A9.3 [Caenorhabditis elegans] 0.0
blast CAE67215 Hypothetical protein CBG12651 [Caenorhabditis briggsae] 3.0E-62
blast AAB54144 Trypsin-like protease protein 7 [Caenorhabditis elegans] ref|NP_491910.1| TRYpsin-like Protease family member (try-7) [Caenorhabditis elegans] 2.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR001254 EMBL-EBI Peptidase S1, chymotrypsin 9.4E-8
Sequence
Target Sequence 
>C. ELEGANS:188629_AT
gaaatacagtacccggatgacataatgattattgaattatctgaagatgttgaatacagt
tccgaattgaagccagtttgtgttgctggcaagtttcacaaatcagtgtttatcaagttg
tttaacaacaataatttaggcagtacagatgacaatgctccaaatagtcatttggatctt
ttcggatttggagatgatcctcctcgtgataaaccatcgtccttaaagaatttgcatgat
attccgctcaaacatcataaagtggagataatggatatgaacaaggaaggaacatcaaaa
cgaatggatcctcgactttttatagcgaaaagtgtgactagaacatctgttgcatgtcca
ggagatagtggtgctggtggagttaaggaaattgacaaaaggacgacagttgttggagta
tttactaaaaagtttcgtgagaagtttttcctgatttctgttaaaagatattacattcca
gccacctgcaagtttgtttaccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATACAGTACCCGGATGACATAA 434 361 436 Antisense
TACAGTTCCGAATTGAAGCCAGTTT 326 643 490 Antisense
GTGTTGCTGGCAAGTTTCACAAATC 533 485 515 Antisense
GGATTTGGAGATGATCCTCCTCGTG 608 509 619 Antisense
TCCTCGTGATAAACCATCGTCCTTA 450 593 636 Antisense
TTGCATGATATTCCGCTCAAACATC 37 705 667 Antisense
GAATGGATCCTCGACTTTTTATAGC 308 333 737 Antisense
GAACATCTGTTGCATGTCCAGGAGA 278 351 776 Antisense
GAGAAGTTTTTCCTGATTTCTGTTA 554 391 874 Antisense
TTAAAAGATATTACATTCCAGCCAC 181 683 896 Antisense
CAGCCACCTGCAAGTTTGTTTACCG 309 201 914 Antisense
Sequence Source Affymetrix Proprietary Database