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[188628_at] ETS domain

Description F57A8.1 /REP_DB=WormBase Gene ID /WP=CE05982 /TR=Q20918 /GB=CAA98277.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=ETS domain
Cluster 6grp_high1_10_10 > 17      4grp_high_8_8 > 09      6grp_total > 07      4grp_total > 31      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 493
1 2 3 4 range
A 695.9
(3)
P 		282.2
(-2.1)
A 		210.2
(-3)
A 		485.9
(0.4)
P 		486
B 645.3
(3)
P 		221
(-3)
P 		233.3
(-2.8)
A 		529.3
(1.4)
P 		424
C 615
(3)
P 		310.4
(-1.4)
A 		203.4
(-3)
P 		473.5
(0.9)
P 		412
avr 652.1
(3) 		271.2
(-2.2) 		215.6
(-3) 		496.2
(0.9) 		437

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 935
1 2 3 4 5 6 range
A 452.2
(0.6)
P 		593.7
(3)
P 		260
(-2.8)
P 		319.9
(-1.7)
P 		245.5
(-3)
A 		393.1
(-0.5)
P 		348
B 518.4
(3)
P 		387.9
(0.7)
P 		284.7
(-1.1)
P 		286.9
(-1.1)
P 		179.3
(-3)
P 		237.6
(-2)
P 		339
C 1114.3
(3)
P 		383.2
(-2)
P 		486.7
(-1.3)
P 		288.4
(-2.6)
P 		365.1
(-2.1)
P 		231.8
(-3)
P 		883
avr 695
(3) 		454.9
(-0.3) 		343.8
(-1.9) 		298.4
(-2.5) 		263.3
(-3) 		287.5
(-2.7) 		432
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 199
1 2 3 4 range
A 253.4
(3)
P 		61.3
(-2.8)
A 		54.9
(-3)
A 		71.1
(-2.5)
P 		199
B 205.8
(3)
P 		54.6
(-3)
P 		54.1
(-3)
A 		112.8
(-0.7)
P 		152
C 203.6
(3)
P 		89.2
(-2.2)
A 		70.9
(-3)
P 		79.8
(-2.6)
P 		133
avr 220.9
(3) 		68.4
(-2.7) 		60
(-3) 		87.9
(-2) 		161

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 356
1 2 3 4 5 6 range
A 83.4
(-2)
P 		211.2
(3)
P 		56.6
(-3)
P 		81.1
(-2)
P 		74.1
(-2.3)
A 		95.7
(-1.5)
P 		155
B 180.4
(3)
P 		129.1
(0.2)
P 		69.1
(-3)
P 		76
(-2.6)
P 		72.9
(-2.8)
P 		88.6
(-1.9)
P 		111
C 413
(3)
P 		116.9
(-2)
P 		123.9
(-1.9)
P 		58
(-3)
P 		118.1
(-2)
P 		77.6
(-2.7)
P 		355
avr 225.6
(3) 		152.4
(0.1) 		83.2
(-2.6) 		71.7
(-3) 		88.4
(-2.3) 		87.3
(-2.4) 		154
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188628_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12354
Sequence Type Exemplar sequence
Representative Public ID F57A8.1 NCBI
Target Description F57A8.1 /REP_DB=WormBase Gene ID /WP=CE05982 /TR=Q20918 /GB=CAA98277.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=ETS domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073179(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073179 NCBI Caenorhabditis elegans F57A8.1 (F57A8.1) mRNA, complete cds. 11/11 None
SNAP00000034032 ENSEMBL cdna:SNAP chromosome:CEL140:V:10049806:10050366:1 11/11 None
GENEFINDER00000034048 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10049806:10050366:1 11/11 None
F57A8.1.2 ENSEMBL cdna:known chromosome:CEL140:V:10039922:10051299:1 gene:F57A8.1 11/11 None
F57A8.1.3 ENSEMBL cdna:known chromosome:CEL140:V:10046257:10051299:1 gene:F57A8.1 11/11 None
F57A8.1.1 ENSEMBL cdna:known chromosome:CEL140:V:10046259:10051299:1 gene:F57A8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10046405-10050366(+) 100.0 100.0
Public Domain and Genome References
Gene Title ETS domain
Ensembl F57A8.1
Entrez Gene 179399 Entrez gene
SwissProt Q20918 EMBL-EBI
WormBase CE34035 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94836 Hypothetical protein F57A8.1 [Caenorhabditis elegans] emb|CAA98277.2| Hypothetical protein F57A8.1 [Caenorhabditis elegans] ref|NP_505580.2| F57A8.1 [Caenorhabditis elegans] 1.0E-156
blast CAE61083 Hypothetical protein CBG04834 [Caenorhabditis briggsae] 5.0E-88
blast CAA94836 Hypothetical protein F57A8.1 [Caenorhabditis elegans] emb|CAA98277.2| Hypothetical protein F57A8.1 [Caenorhabditis elegans] ref|NP_505580.2| F57A8.1 [Caenorhabditis elegans] 2.0E-83
Sequence
Target Sequence 
>C. ELEGANS:188628_AT
gactggcgacaatgactccgataacgacggtcttgccacaccaactccagctcgtcgtcg
tcttcgcgaggaagctagctctccgagcccaggcaaacgtggtcatgaagaatcgaaccc
aatggctgatcatccaattgcttggcgtcttcgttcattcaacaatgatcgtgcagttaa
ggtcgcagctcgtcgttgtccagttcaagttctgatcaatcgcccaccaatcccagttgc
ataccgtttcgatgatcacgtggaagctgaaattgaagcagttgaactgatgccaccggc
gccggcgccaaaaagaggacgacgtaacagtcatcgtccatctttggatttcgagaagat
ggttcaggtaattccattgttttatgatagcaattatataattaaaataactgaaaaaaa
aacaactaaaagcctagtttgcgaagttattttcgatctaagagtctttttacagactcg
cattgaggagattgcaccatcatctggaacttctgcattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTGGCGACAATGACTCCGATAAC 155 377 372 Antisense
TCCGATAACGACGGTCTTGCCACAC 620 593 388 Antisense
CTTCGCGAGGAAGCTAGCTCTCCGA 636 215 433 Antisense
TCTCCGAGCCCAGGCAAACGTGGTC 536 607 451 Antisense
GATCATCCAATTGCTTGGCGTCTTC 683 419 499 Antisense
TGGCGTCTTCGTTCATTCAACAATG 134 545 514 Antisense
TGCAGTTAAGGTCGCAGCTCGTCGT 284 577 543 Antisense
GTTCAAGTTCTGATCAATCGCCCAC 650 445 574 Antisense
TCCCAGTTGCATACCGTTTCGATGA 93 599 602 Antisense
ACGTAACAGTCATCGTCCATCTTTG 397 93 693 Antisense
ACCATCATCTGGAACTTCTGCATTC 525 83 867 Antisense
Sequence Source Affymetrix Proprietary Database