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[188627_at] esterase

Description K07C11.4 /REP_DB=WormBase Gene ID /WP=CE07347 /TR=Q21266 /GB=AAA96175.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=esterase
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 73      4grp_highest_8_8 > 26      4grp_high_8_8 > 59      6grp_highest_nonorm > 53      6grp_total > 73      4grp_total > 60      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 225
1 2 3 4 range
A 497.2
(3)
P 		416.4
(-0.3)
P 		431.5
(0.4)
P 		348.1
(-3)
P 		149
B 391.9
(-3)
P 		429.1
(2.7)
P 		430.8
(3)
P 		401.9
(-1.5)
P 		39
C 507.9
(-0.3)
P 		489.8
(-1.2)
P 		573.3
(3)
P 		453.2
(-3)
P 		120
avr 465.7
(2) 		445.1
(0.4) 		478.5
(3) 		401.1
(-3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 998
1 2 3 4 5 6 range
A 471.5
(-3)
P 		582.4
(-1.9)
P 		993.6
(2)
P 		1100
(3)
P 		852.6
(0.6)
P 		781.2
(-0)
P 		629
B 683.3
(-2.6)
P 		622.7
(-3)
P 		1469.7
(3)
P 		1216.5
(1.2)
P 		838.8
(-1.5)
P 		826.4
(-1.6)
P 		847
C 578.9
(-3)
P 		707.2
(-1.8)
P 		982.7
(0.8)
P 		1221.7
(3)
P 		850.7
(-0.5)
P 		800.1
(-0.9)
P 		643
avr 577.9
(-3) 		637.4
(-2.4) 		1148.7
(2.7) 		1179.4
(3) 		847.4
(-0.3) 		802.6
(-0.8) 		602
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 149
1 2 3 4 range
A 181
(3)
P 		90.4
(-1.2)
P 		112.8
(-0.1)
P 		51
(-3)
P 		130
B 125
(3)
P 		106
(0.1)
P 		99.8
(-0.8)
P 		85.6
(-3)
P 		39
C 168.1
(1.5)
P 		140.8
(0.1)
P 		199.8
(3)
P 		76.4
(-3)
P 		123
avr 158
(3) 		112.4
(-0.1) 		137.5
(1.6) 		71
(-3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 270
1 2 3 4 5 6 range
A 86.9
(-3)
P 		207.1
(0.8)
P 		216.4
(1)
P 		279
(3)
P 		257.3
(2.3)
P 		190.2
(0.2)
P 		192
B 237.8
(-1.8)
P 		207.3
(-3)
P 		356.9
(3)
P 		322.2
(1.6)
P 		340.8
(2.4)
P 		308.2
(1)
P 		150
C 214.6
(-3)
P 		215.8
(-2.9)
P 		250.1
(0.5)
P 		245.7
(0.1)
P 		275.3
(3)
P 		267.8
(2.3)
P 		61
avr 179.8
(-3) 		210.1
(-1.4) 		274.5
(2.1) 		282.3
(2.5) 		291.1
(3) 		255.4
(1.1) 		111
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188627_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12005
Sequence Type Exemplar sequence
Representative Public ID K07C11.4 NCBI
Target Description K07C11.4 /REP_DB=WormBase Gene ID /WP=CE07347 /TR=Q21266 /GB=AAA96175.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=esterase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072713(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072713 NCBI Caenorhabditis elegans K07C11.4 (esterase) mRNA, complete cds. 11/11 None
SNAP00000021025 ENSEMBL cdna:SNAP chromosome:CEL140:V:8206102:8208350:1 11/11 None
GENEFINDER00000021035 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8204399:8208350:1 11/11 None
K07C11.4 ENSEMBL cdna:known chromosome:CEL140:V:8206032:8208561:1 gene:K07C11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8206102-8208351(+) 100.0 100.0
Public Domain and Genome References
Gene Title esterase
Ensembl K07C11.4
Entrez Gene 179198 Entrez gene
SwissProt Q21266 EMBL-EBI
WormBase CE07347 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA96175 Hypothetical protein K07C11.4 [Caenorhabditis elegans] ref|NP_505114.1| K07C11.4 [Caenorhabditis elegans] 0.0
blast Q04456 Gut esterase 1 precursor (Non-specific carboxylesterase) emb|CAE62343.1| Hypothetical protein CBG06418 [Caenorhabditis briggsae] gb|AAA28056.1| esterase 6.0E-71
blast Q04456 Gut esterase 1 precursor (Non-specific carboxylesterase) emb|CAE62343.1| Hypothetical protein CBG06418 [Caenorhabditis briggsae] gb|AAA28056.1| esterase 9.0E-71
blast AAA96174 Temporarily assigned gene name protein 225 [Caenorhabditis elegans] ref|NP_505113.1| Temporarily Assigned Gene name family member (tag-225) [Caenorhabditis elegans] gb|AAG50211.1| tissue inhibitor of metalloproteinase 2 [Caenorhabditis elegans] sp|Q21265|TIMPL_CAEEL Putative metalloproteinase inhibitor K07C11.5 precursor (TIMP-like protein) 1.0E-69
blast AAB66165 Abnormal gut esterase protein 1 [Caenorhabditis elegans] ref|NP_503411.1| R12A1.4 [Caenorhabditis elegans] sp|Q04457|EST1_CAEEL Gut esterase 1 precursor (Non-specific carboxylesterase) gb|AAA28057.1| elastase 1.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.0E-126
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.0E-126
Pfam IPR001820 EMBL-EBI Tissue inhibitor of metalloproteinase 4.0E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000021035 2 182-204,216-238
Sequence
Target Sequence 
>C. ELEGANS:188627_AT
tttcatcagatctcaagttgccgttgaacaagaatttggaacagcatctgcaagattctc
tggtttagtcgaggaattctacttgagtggcccaatgactggaaattcgagtttttactt
gaacgcatttgccaacttgctcagtgatctacaatataatattccaactctacatgaagt
tgagctcaagctccagcacggatgggacacttatctctacattattgactatgacagtga
aacaacaaaagatccaactcatccaatcaagggaccattccatgcttctgaattgagata
tttgttcaattttaacggaatggatacaattccattcaatgataaagacaagaagttcga
gaattactttgtgaacgcaattgtcaacttcataaacactggaacaccaagtacgaaagc
cttactgtggcctgcagtttcaaaatctcaaccatttgccaatcttcttctgaacgacaa
accatccgttcaaacatcattccgacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCATCAGATCTCAAGTTGCCGTT 60 669 1113 Antisense
GCATCTGCAAGATTCTCTGGTTTAG 595 309 1156 Antisense
GGAATTCTACTTGAGTGGCCCAATG 519 531 1185 Antisense
GAACGCATTTGCCAACTTGCTCAGT 460 347 1233 Antisense
AAGCTCCAGCACGGATGGGACACTT 440 149 1300 Antisense
GGGACACTTATCTCTACATTATTGA 302 495 1316 Antisense
AAGATCCAACTCATCCAATCAAGGG 615 153 1361 Antisense
AATCAAGGGACCATTCCATGCTTCT 426 171 1377 Antisense
ACGAAAGCCTTACTGTGGCCTGCAG 510 91 1525 Antisense
TTTGCCAATCTTCTTCTGAACGACA 302 667 1567 Antisense
ATCCGTTCAAACATCATTCCGACAA 593 37 1596 Antisense
Sequence Source Affymetrix Proprietary Database