[Home] | [Total List]

[188626_at] CUB domain

Description C15A11.3 /REP_DB=WormBase Gene ID /WP=CE08171 /TR=Q93212 /GB=CAB01962.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=CUB domain
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 05      4grp_highest_8_8 > 51      4grp_high_8_8 > 24      6grp_highest_nonorm > 70      6grp_total > 15      4grp_total > 47      6grp_highest_sub > De      6grp_cgc > 22      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 353
1 2 3 4 range
A 453.3
(3)
P 		135.6
(-2.4)
P 		100.8
(-3)
P 		194.6
(-1.4)
P 		353
B 387.1
(3)
P 		168.7
(-2.2)
P 		136.7
(-3)
P 		236.4
(-0.6)
P 		250
C 450.5
(3)
P 		170.4
(-2.5)
P 		211.5
(-1.7)
P 		146.2
(-3)
P 		304
avr 430.3
(3) 		158.2
(-2.8) 		149.7
(-3) 		192.4
(-2.1) 		281

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 357
1 2 3 4 5 6 range
A 360
(3)
P 		297.5
(1.3)
P 		267.7
(0.5)
P 		137.7
(-3)
P 		173.6
(-2)
P 		137.6
(-3)
P 		222
B 465.7
(3)
P 		369.8
(1.4)
P 		243.8
(-0.7)
P 		222.7
(-1.1)
P 		203.3
(-1.4)
P 		108.6
(-3)
P 		357
C 418
(3)
P 		347.1
(1.6)
P 		226.2
(-0.9)
P 		164.7
(-2.1)
P 		122.4
(-3)
P 		185.5
(-1.7)
P 		296
avr 414.6
(3) 		338.1
(1.3) 		245.9
(-0.7) 		175
(-2.3) 		166.4
(-2.5) 		143.9
(-3) 		271
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 165.1
(3)
P 		29.4
(-2.9)
P 		26.4
(-3)
P 		28.5
(-2.9)
P 		139
B 123.4
(3)
P 		41.7
(-2.3)
P 		31.7
(-3)
P 		50.4
(-1.8)
P 		92
C 149.1
(3)
P 		49
(-1.8)
P 		73.7
(-0.6)
P 		24.7
(-3)
P 		124
avr 145.9
(3) 		40
(-2.7) 		43.9
(-2.5) 		34.5
(-3) 		111

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 66.4
(-0.3)
P 		105.8
(3)
P 		58.3
(-0.9)
P 		34.9
(-2.9)
P 		52.4
(-1.4)
P 		33.5
(-3)
P 		72
B 162
(3)
P 		123.1
(1.1)
P 		59.2
(-2.1)
P 		59
(-2.1)
P 		82.6
(-0.9)
P 		40.5
(-3)
P 		122
C 154.9
(3)
P 		105.9
(0.6)
P 		57.6
(-1.8)
P 		33.1
(-3)
P 		39.6
(-2.7)
P 		62.1
(-1.6)
P 		122
avr 127.8
(3) 		111.6
(1.9) 		58.4
(-1.9) 		42.3
(-3) 		58.2
(-1.9) 		45.4
(-2.8) 		86
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188626_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1007
Sequence Type Exemplar sequence
Representative Public ID C15A11.3 NCBI
Target Description C15A11.3 /REP_DB=WormBase Gene ID /WP=CE08171 /TR=Q93212 /GB=CAB01962.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=CUB domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059687(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059687 NCBI Caenorhabditis elegans Suppressor Of Lurcher movement defect family member (sol-1) (sol-1) mRNA, complete cds. 11/11 None
SNAP00000007966 ENSEMBL cdna:SNAP chromosome:CEL140:I:7397235:7399416:-1 11/11 None
GENEFINDER00000007979 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7397235:7404012:-1 11/11 None
C15A11.3.2 ENSEMBL cdna:known chromosome:CEL140:I:7396797:7404047:-1 gene:C15A11.3 11/11 None
C15A11.3.1 ENSEMBL cdna:known chromosome:CEL140:I:7397188:7404047:-1 gene:C15A11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7397165-7398418(-) 100.0 100.0
Public Domain and Genome References
Gene Title CUB domain
Gene Symbol sol-1
Ensembl C15A11.3
Entrez Gene 172493 Entrez gene
SwissProt Q93212 EMBL-EBI
WormBase CE36685 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01962 Hypothetical protein C15A11.3 [Caenorhabditis elegans] ref|NP_492088.3| Suppressor Of Lurcher movement defect family member (sol-1) [Caenorhabditis elegans] gb|AAR26326.1| SOL-1 [Caenorhabditis elegans] sp|Q93212|SOL1_CAEEL Suppressor of lurcher protein 1 precursor 0.0
blast CAE66598 Hypothetical protein CBG11922 [Caenorhabditis briggsae] 0.0
blast CAE66598 Hypothetical protein CBG11922 [Caenorhabditis briggsae] 1.0E-174
Protein Domains
Database ID Description E-Value
Pfam IPR000859 EMBL-EBI CUB 4.6E-9
Pfam IPR000859 EMBL-EBI CUB 5.3E-8
Pfam IPR000859 EMBL-EBI CUB 4.6E-9
Pfam IPR000859 EMBL-EBI CUB 4.6E-9
Sequence
Target Sequence 
>C. ELEGANS:188626_AT
atgtcgcttctcattcaattcatcagagcacacaaatgggaaactttggtctgcaaacta
tccaggattgtatccgagaaatttatattgtgaatatatattccatggaagaaatgatca
agttgttcatattcattttgaatatttcgacattgaaggttttaaccaatgcgacgaaac
aactcaaagtgattatattctattttcaaactatcagactcatgatcgaacgaatcgtcg
tttttgtgggaaaacagctccaaaaggtccaatattatcagaatccaattactttcgaat
gattttctcaacgaatgacatctttgatgcaaccggattttatgcacattatcagtttat
cactcaagagaaatctcaaatcagtcgggtcaagctcacgatatcttctagccaaactcc
gttctcctcatttttccttgtgatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCGCTTCTCATTCAATTCATCA 377 49 330 Antisense
GAAACTTTGGTCTGCAAACTATCCA 512 353 369 Antisense
GACTCATGATCGAACGAATCGTCGT 524 371 546 Antisense
GAAAACAGCTCCAAAAGGTCCAATA 548 353 579 Antisense
GATTTTCTCAACGAATGACATCTTT 317 429 630 Antisense
GACATCTTTGATGCAACCGGATTTT 2 371 646 Antisense
GCACATTATCAGTTTATCACTCAAG 171 317 673 Antisense
GAGAAATCTCAAATCAGTCGGGTCA 439 393 697 Antisense
GTCGGGTCAAGCTCACGATATCTTC 453 471 713 Antisense
CTCACGATATCTTCTAGCCAAACTC 200 227 724 Antisense
TTCTCCTCATTTTTCCTTGTGATAT 501 693 751 Antisense
Sequence Source Affymetrix Proprietary Database