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[188623_at] ribokinase

Description F07A11.5 /REP_DB=WormBase Gene ID /WP=CE03147 /TR=Q19133 /GB=CAA91318.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=ribokinase
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 31      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 32      6grp_total > 31      4grp_total > 58      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1048
1 2 3 4 range
A 884.2
(-0.4)
P 		1248.7
(2.1)
P 		1374.8
(3)
P 		507.9
(-3)
P 		867
B 882.6
(-0.2)
P 		1226.2
(1.8)
P 		1435.8
(3)
P 		387.9
(-3)
P 		1048
C 912.7
(0.2)
P 		1189.2
(2)
P 		1344.5
(3)
P 		424.3
(-3)
P 		920
avr 893.2
(-0.1) 		1221.4
(2) 		1385
(3) 		440
(-3) 		945

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1308
1 2 3 4 5 6 range
A 1183.4
(0.9)
P 		1328.5
(1.7)
P 		1564.4
(3)
P 		899.7
(-0.6)
P 		793
(-1.2)
P 		466.9
(-3)
P 		1098
B 1015.3
(-0.7)
P 		1388.9
(1.1)
P 		1774.8
(3)
P 		1042.9
(-0.5)
P 		923.2
(-1.1)
P 		536.6
(-3)
P 		1238
C 826.3
(-1)
P 		1302.2
(3)
P 		1300.3
(3)
P 		985
(0.3)
P 		709.4
(-2)
P 		585.6
(-3)
P 		717
avr 1008.3
(-0.2) 		1339.9
(1.8) 		1546.5
(3) 		975.9
(-0.4) 		808.5
(-1.4) 		529.7
(-3) 		1017
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 397
1 2 3 4 range
A 321.9
(2.2)
P 		271.1
(1.1)
P 		359.4
(3)
P 		74.3
(-3)
P 		285
B 281.4
(1.8)
P 		302.8
(2.3)
P 		332.7
(3)
P 		82.7
(-3)
P 		250
C 302.1
(0.5)
P 		341.9
(1.1)
P 		468.6
(3)
P 		71.5
(-3)
P 		397
avr 301.8
(1.4) 		305.3
(1.4) 		386.9
(3) 		76.2
(-3) 		311

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 359
1 2 3 4 5 6 range
A 218.2
(-1.3)
P 		472.5
(3)
P 		340.7
(0.8)
P 		228.2
(-1.1)
P 		239.3
(-0.9)
P 		113.7
(-3)
P 		359
B 353.3
(0.5)
P 		462.3
(3)
P 		431
(2.3)
P 		276.2
(-1.3)
P 		375.1
(1)
P 		200.1
(-3)
P 		262
C 306.3
(0.3)
P 		397.4
(3)
P 		331
(1)
P 		198.1
(-2.9)
P 		229.6
(-2)
P 		196
(-3)
P 		201
avr 292.6
(-0.3) 		444.1
(3) 		367.6
(1.3) 		234.2
(-1.6) 		281.3
(-0.6) 		169.9
(-3) 		274
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188623_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2656
Sequence Type Exemplar sequence
Representative Public ID F07A11.5 NCBI
Target Description F07A11.5 /REP_DB=WormBase Gene ID /WP=CE03147 /TR=Q19133 /GB=CAA91318.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=ribokinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064082(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064082 NCBI Caenorhabditis elegans F07A11.5 (ribokinase) mRNA, complete cds. 11/11 None
SNAP00000044555 ENSEMBL cdna:SNAP chromosome:CEL140:II:11612242:11614234:1 11/11 None
GENEFINDER00000044564 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11612242:11614234:1 11/11 None
F07A11.5 ENSEMBL cdna:known chromosome:CEL140:II:11611989:11614284:1 gene:F07A11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11611985-11614231(+) 97.87 100.0
Public Domain and Genome References
Gene Title ribokinase
Ensembl F07A11.5
Entrez Gene 174781 Entrez gene
SwissProt Q19133 EMBL-EBI
WormBase CE03147 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:262519_AT pfkB-type carbohydrate kinase family protein at
CANINE:1586151_AT similar to ribokinase cfa
CANINE_2:CFA.10418.1.A1_AT similar to ribokinase cfa
CANINE_2:CFAAFFX.8748.1.S1_AT similar to ribokinase cfa
CANINE_2:CFAAFFX.8748.1.S1_S_AT similar to ribokinase cfa
DROSOPHILA_2:1624518_AT dm
DROSGENOME1:144081_AT dm
CHICKEN:GGAAFFX.6314.1.S1_AT similar to ribokinase; 5230400M11Rik gga
CHICKEN:GGAAFFX.6314.1.S1_S_AT similar to ribokinase; 5230400M11Rik gga
HG-FOCUS:57540_AT ribokinase hs
HG-U133A_2:57540_AT ribokinase hs
HG-U133_PLUS_2:57540_AT ribokinase hs
HG-U133A:57540_AT ribokinase hs
HG-U95B:57540_AT ribokinase hs
HU35KSUBA:RC_AA037228_AT ribokinase hs
HU35KSUBD:RC_T69020_S_AT ribokinase hs
HG-U133A:219222_AT ribokinase hs
HG-U133_PLUS_2:219222_AT ribokinase hs
HG-U133A_2:219222_AT ribokinase hs
U133_X3P:G11545854_3P_S_AT ribokinase hs
U133_X3P:G11545854_3P_AT ribokinase hs
U133_X3P:57540_3P_AT ribokinase hs
U133_X3P:4851167C_3P_AT ribokinase hs
HG-U95C:56868_AT ribokinase hs
HG-U95C:56870_G_AT ribokinase hs
HG-U95C:61083_AT Ribokinase hs
HU35KSUBB:RC_T86146_AT Ribokinase hs
MOE430A:1424841_S_AT ribokinase mm
MOUSE430_2:1424841_S_AT ribokinase mm
MOUSE430A_2:1424841_S_AT ribokinase mm
MOUSE430_2:1424840_AT ribokinase mm
MOE430A:1424840_AT ribokinase mm
MOUSE430A_2:1424840_AT ribokinase mm
MU11KSUBA:AA260331_S_AT ribokinase mm
MU11KSUBB:MSA.16298.0_S_AT ribokinase mm
MG-U74AV2:104336_AT ribokinase mm
MG-U74BV2:106063_AT ribokinase mm
MG-U74CV2:169170_AT ribokinase mm
MU19KSUBB:TC30866_AT Ribokinase (Rbks), mRNA mm
MU19KSUBB:TC30866_G_AT Ribokinase (Rbks), mRNA mm
RG-U34C:RC_AI236089_AT ribokinase (predicted) rn
RG-U34C:RC_AI236916_S_AT ribokinase (predicted) rn
RG-U34C:RC_AI233177_AT ribokinase (predicted) rn
RG-U34C:RC_AI175440_AT ribokinase (predicted) rn
RAE230A:1375093_AT ribokinase (predicted) rn
RAT230_2:1375093_AT ribokinase (predicted) rn
YEAST_2:1769967_AT Putative ribokinase Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6014 D-ribose metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4747 ribokinase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91318 Hypothetical protein F07A11.5 [Caenorhabditis elegans] ref|NP_496483.1| F07A11.5 [Caenorhabditis elegans] 0.0
blast CAA91318 Hypothetical protein F07A11.5 [Caenorhabditis elegans] ref|NP_496483.1| F07A11.5 [Caenorhabditis elegans] 1.0E-169
blast CAE59463 Hypothetical protein CBG02845 [Caenorhabditis briggsae] 1.0E-131
blast CAE59463 Hypothetical protein CBG02845 [Caenorhabditis briggsae] 1.0E-130
blast NP_071411 ribokinase [Homo sapiens] gb|AAH17425.1| Ribokinase [Homo sapiens] emb|CAC12877.1| ribokinase [Homo sapiens] sp|Q9H477|RBSK_HUMAN Ribokinase 2.0E-55
Protein Domains
Database ID Description E-Value
Pfam IPR002173 EMBL-EBI Carbohydrate kinase, PfkB 9.1E-95
Pfam IPR002173 EMBL-EBI Carbohydrate kinase, PfkB 9.1E-95
Sequence
Target Sequence 
>C. ELEGANS:188623_AT
acaacattgtggtgacgctgggtgcaaatcttgaaatgtcgcctgaaatcgctgatgcga
actcttcaaaaattgctggctcgaaaatggtcatttgtcagggagaaattgacgaaaaag
gaaatagaagagccttcgaaattgctagaagtcacggagtcaccacttttttaaatccag
ctcctggggatccgaatatggataagacgattctcgagctggttgatattatttgtacca
atgagaatgaagcggaattcatcactggaatcgctcaaaacaacgtgaaagacgctgaaa
aagcagcacgtgcaatgctcaaaatgggacctcaacatgcgatcataactctcggaggca
aaggtgtcctgcttgcatccaaaggagtcgatgatgttgagcataccgccgtgatcaaag
tcgatgcagttgatactacgggagccggtgactgtttctgtggttcactggctgctcatt
tggttgccggccatccgatttccgcatcaatacgctcggctgccaacttggccgcacttt
ctgtgacacgtcatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAACATTGTGGTGACGCTGGGTGC 622 111 425 Antisense
AAATGTCGCCTGAAATCGCTGATGC 223 119 458 Antisense
AGAAGTCACGGAGTCACCACTTTTT 122 73 571 Antisense
ACCACTTTTTTAAATCCAGCTCCTG 346 83 586 Antisense
GACGATTCTCGAGCTGGTTGATATT 285 379 630 Antisense
GAGGCAAAGGTGTCCTGCTTGCATC 428 405 779 Antisense
GAGCATACCGCCGTGATCAAAGTCG 389 389 823 Antisense
GCCGGTGACTGTTTCTGTGGTTCAC 389 283 868 Antisense
GTTCACTGGCTGCTCATTTGGTTGC 417 445 887 Antisense
TCCGATTTCCGCATCAATACGCTCG 82 595 918 Antisense
CCGCACTTTCTGTGACACGTCATGG 345 263 956 Antisense
Sequence Source Affymetrix Proprietary Database