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[188621_at] WW domain

Description Y40B1A.2 /REP_DB=WormBase Gene ID /WP=CE21787 /TR=Q9XW28 /GB=CAA22305.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=WW domain
Cluster 6grp_total > 08      4grp_total > 02      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 3.2
(3)
A 		1.1
(-3)
A 		2.3
(0.4)
A 		2.1
(-0.1)
A 		2
B 1.4
(-2.9)
A 		2.7
(-2.3)
A 		1.2
(-3)
A 		13.9
(3)
A 		13
C 1
(-3)
A 		2.1
(-2.4)
A 		2
(-2.4)
A 		11.2
(3)
A 		10
avr 1.9
(-2.9) 		2
(-2.8) 		1.8
(-3) 		9.1
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 2.3
(3)
A 		1.1
(-2.5)
A 		1
(-3)
A 		1.4
(-1.2)
A 		1.4
(-1.2)
A 		1.4
(-1.2)
A 		1
B 1.8
(1.2)
A 		1.1
(-2.1)
A 		2.2
(3)
A 		0.9
(-3)
A 		0.9
(-3)
A 		1.9
(1.6)
A 		1
C 1.8
(-0.1)
A 		0.9
(-2.7)
A 		1.3
(-1.6)
A 		2.9
(3)
A 		0.9
(-2.7)
A 		0.8
(-3)
A 		2
avr 2
(3) 		1
(-3) 		1.5
(0) 		1.7
(1.2) 		1.1
(-2.4) 		1.4
(-0.6) 		1
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1.2
(3)
A 		0.2
(-3)
A 		0.6
(-0.6)
A 		0.3
(-2.4)
A 		1
B 0.4
(-2.8)
A 		0.7
(-2.1)
A 		0.3
(-3)
A 		3
(3)
A 		3
C 0.3
(-3)
A 		0.6
(-1.9)
A 		0.7
(-1.5)
A 		1.9
(3)
A 		2
avr 0.6
(-2.5) 		0.5
(-3) 		0.5
(-3) 		1.7
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.4
(3)
A 		0.4
(3)
A 		0.2
(-3)
A 		0.3
(-0)
A 		0.4
(3)
A 		0.3
(-0)
A 		0
B 0.6
(1.8)
A 		0.4
(-0.6)
A 		0.5
(0.6)
A 		0.2
(-3)
A 		0.4
(-0.6)
A 		0.7
(3)
A 		1
C 0.7
(3)
A 		0.3
(-3)
A 		0.3
(-3)
A 		0.6
(1.5)
A 		0.3
(-3)
A 		0.3
(-3)
A 		0
avr 0.6
(3) 		0.4
(-1) 		0.3
(-3) 		0.4
(-1) 		0.4
(-1) 		0.4
(-1) 		0
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188621_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.486
Sequence Type Exemplar sequence
Representative Public ID Y40B1A.2 NCBI
Target Description Y40B1A.2 /REP_DB=WormBase Gene ID /WP=CE21787 /TR=Q9XW28 /GB=CAA22305.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=WW domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060950(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060950 NCBI Caenorhabditis elegans Y40B1A.2 (Y40B1A.2) mRNA, complete cds. 11/11 None
Y40B1A.2 ENSEMBL cdna:known chromosome:CEL140:I:13355199:13357378:1 gene:Y40B1A.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031119 3/11 Cross Hyb Matching Probes None
GENEFINDER00000031126 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13355129-13357309(+) 100.0 100.0
Public Domain and Genome References
Gene Title WW domain
Ensembl Y40B1A.2
Entrez Gene 189781 Entrez gene
SwissProt Q9XW28 EMBL-EBI
WormBase CE21787 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22305 Hypothetical protein Y40B1A.2 [Caenorhabditis elegans] ref|NP_493351.1| Y40B1A.2 [Caenorhabditis elegans] 4.0E-66
blast AAF48690 CG8949-PA [Drosophila melanogaster] ref|NP_573187.1| CG8949-PA [Drosophila melanogaster] 3.0E-9
blast ABB36448 LD32364p [Drosophila melanogaster] 3.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR001202 EMBL-EBI WW/Rsp5/WWP domain 2.9E-8
Sequence
Target Sequence 
>C. ELEGANS:188621_AT
cgtgtaccgcgaacatttgcaggatggacggagcaaatgagctccagtggaaaaatgtat
tattataacaaaaagactgagatctcacaatgggataaaccagcagaatggcctgcggaa
ggtggatcggcggaacgagataaaccgaaaggaggagttaatgaaaaaccacgttttgcg
gaagatcgatataatgaatatatcggtcaattatcttcttcttcttcgtgtttctggcga
caaatcggcatcttcagtctctcgtcctcctcaaagtattatctctgcgcttctcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTGTACCGCGAACATTTGCAGGAT 1 243 19 Antisense
GGACGGAGCAAATGAGCTCCAGTGG 144 525 44 Antisense
GACTGAGATCTCACAATGGGATAAA 465 373 93 Antisense
AACCAGCAGAATGGCCTGCGGAAGG 202 145 116 Antisense
CTGCGGAAGGTGGATCGGCGGAACG 63 237 131 Antisense
AAACCACGTTTTGCGGAAGATCGAT 291 119 184 Antisense
TATCGGTCAATTATCTTCTTCTTCT 323 657 219 Antisense
TTCGTGTTTCTGGCGACAAATCGGC 328 695 243 Antisense
GACAAATCGGCATCTTCAGTCTCTC 8 367 257 Antisense
TCTCGTCCTCCTCAAAGTATTATCT 560 611 278 Antisense
CAAAGTATTATCTCTGCGCTTCTCG 249 193 290 Antisense
Sequence Source Affymetrix Proprietary Database