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[188619_at]

Description ZK1321.1_rc /REP_DB=WormBase Gene ID /WP=CE01708 /TR=SW:Q09368 /GB=CAA88475.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /REVCOMP
Cluster 6grp_total > 01      4grp_total > 07      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 26.3
(1.7)
A 		5.8
(-3)
A 		6.1
(-2.9)
A 		32
(3)
A 		26
B 55.4
(3)
A 		7.3
(-3)
A 		18.2
(-1.6)
A 		45.5
(1.8)
A 		48
C 25.2
(-1.2)
A 		9.3
(-3)
A 		33.5
(-0.3)
A 		63.6
(3)
A 		54
avr 35.6
(1.3) 		7.5
(-3) 		19.3
(-1.2) 		47
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 9.1
(-3)
A 		15.3
(-1.9)
A 		16.7
(-1.7)
A 		20
(-1.1)
A 		43.3
(3)
A 		18.1
(-1.4)
A 		34
B 35.5
(1.3)
A 		48.7
(3)
A 		36.1
(1.4)
A 		1.5
(-3)
A 		40.2
(1.9)
A 		33.9
(1.1)
A 		47
C 5.6
(-3)
A 		46.4
(3)
A 		43.5
(2.6)
A 		7.9
(-2.7)
A 		40.1
(2.1)
A 		36.5
(1.5)
A 		41
avr 16.7
(-1.7) 		36.8
(2.2) 		32.1
(1.3) 		9.8
(-3) 		41.2
(3) 		29.5
(0.8) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 9.6
(3)
A 		1.3
(-3)
A 		1.6
(-2.8)
A 		4.7
(-0.5)
A 		8
B 17.7
(3)
A 		1.8
(-3)
A 		4.2
(-2.1)
A 		9.7
(-0)
A 		16
C 8.3
(0.7)
A 		2.7
(-3)
A 		11.7
(3)
A 		10.7
(2.3)
A 		9
avr 11.9
(3) 		1.9
(-3) 		5.8
(-0.7) 		8.4
(0.9) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 1.7
(-3)
A 		5.4
(-1.1)
A 		3.6
(-2)
A 		5.1
(-1.2)
A 		13.1
(3)
A 		4.4
(-1.6)
A 		11
B 12.3
(1.5)
A 		16.2
(3)
A 		8.8
(0.2)
A 		0.4
(-3)
A 		16.3
(3)
A 		12.7
(1.6)
A 		16
C 2.1
(-2.8)
A 		14.2
(3)
A 		11.1
(1.5)
A 		1.6
(-3)
A 		13
(2.4)
A 		12.2
(2)
A 		13
avr 5.4
(-1.5) 		11.9
(1.9) 		7.8
(-0.2) 		2.4
(-3) 		14.1
(3) 		9.8
(0.8) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188619_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28111
Sequence Type Exemplar sequence
Representative Public ID ZK1321.1 NCBI
Target Description ZK1321.1_rc /REP_DB=WormBase Gene ID /WP=CE01708 /TR=SW:Q09368 /GB=CAA88475.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /REVCOMP
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) ZK1321.1
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
ZK1321.1 ZK1321.1_rc /REP_DB=WormBase Gene ID /WP=CE01708 /TR=SW:Q09368 /GB=CAA88475.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /REVCOMP A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_063702 11/11 Negative Strand Matching Probes A 
GENEFINDER00000027169 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9753937-9755084(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZK1321.1
Sequence
Target Sequence 
>C. ELEGANS:188619_AT
gagaagttgtcactgtctttcgtacggctgttacaattcgatgaggttttgagggtggca
gaggcacgccatgctcgaaaatcactgcatactcgcgtagacatggatcaggtaatcgaa
aacaagcaagcttctggtttgaatttccatgtttcctgccacacgctgatttggtcgcca
atggatcaccacatgaacaccgtaatctgacagattcccaaggtgtcagaaatcgatgag
ttcgcttgttgagcagagtcggatcacaaatataactattctgtgctagccaaatgtata
ggttaggccttttaggtgagaacgctgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAAGTTGTCACTGTCTTTCGTAC 614 391 99 Antisense
GTCTTTCGTACGGCTGTTACAATTC 666 467 113 Antisense
TGAGGGTGGCAGAGGCACGCCATGC 631 567 148 Antisense
GCACGCCATGCTCGAAAATCACTGC 317 315 162 Antisense
ATCACTGCATACTCGCGTAGACATG 140 29 179 Antisense
TGGTTTGAATTTCCATGTTTCCTGC 650 551 233 Antisense
GATTTGGTCGCCAATGGATCACCAC 492 427 266 Antisense
GGATCACCACATGAACACCGTAATC 547 509 281 Antisense
GAGTTCGCTTGTTGAGCAGAGTCGG 123 399 336 Antisense
ATAACTATTCTGTGCTAGCCAAATG 513 25 370 Antisense
AGGCCTTTTAGGTGAGAACGCTGTA 560 1 403 Antisense
Sequence Source Affymetrix Proprietary Database