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[188618_at] zinc finger protein

Description Y46H3D.6 /REP_DB=WormBase Gene ID /WP=CE24323 /GB=AAK72309.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_highest_10_10 > 73      6grp_high1_10_10 > 47      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 91      6grp_total > 47      4grp_total > 02      6grp_highest_sub > Cu      6grp_cgc > 17      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1951
1 2 3 4 range
A 217.6
(-2.8)
P 		261.6
(-2.6)
P 		166.7
(-3)
P 		1602.2
(3)
P 		1436
B 297.8
(-2.7)
P 		255.9
(-2.8)
P 		192.9
(-3)
P 		2043
(3)
P 		1850
C 288.1
(-2.8)
P 		209.4
(-3)
P 		223.2
(-3)
P 		2117.9
(3)
P 		1909
avr 267.8
(-2.7) 		242.3
(-2.8) 		194.3
(-3) 		1921
(3) 		1727

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 282
1 2 3 4 5 6 range
A 392.3
(3)
P 		169.8
(-2.2)
P 		250.3
(-0.3)
P 		154.2
(-2.6)
P 		137.3
(-3)
P 		307.3
(1)
P 		255
B 367.3
(2.9)
P 		257.3
(0.3)
P 		168.1
(-1.8)
P 		170.4
(-1.7)
P 		115.5
(-3)
P 		370.1
(3)
P 		255
C 387.7
(3)
P 		192.8
(-1.2)
P 		173.2
(-1.6)
P 		154.7
(-2)
P 		110.1
(-3)
P 		356.1
(2.3)
P 		278
avr 382.4
(3) 		206.6
(-1) 		197.2
(-1.3) 		159.8
(-2.1) 		121
(-3) 		344.5
(2.1) 		261
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 392
1 2 3 4 range
A 79.2
(-1.9)
P 		56.8
(-2.6)
P 		43.6
(-3)
P 		234.5
(3)
P 		191
B 95
(-2.2)
P 		63.2
(-2.7)
P 		44.7
(-3)
P 		435.4
(3)
P 		391
C 95.4
(-2.3)
P 		60.2
(-3)
P 		77.8
(-2.6)
P 		357.1
(3)
P 		297
avr 89.9
(-2.3) 		60.1
(-2.9) 		55.4
(-3) 		342.3
(3) 		287

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 72.3
(2.6)
P 		60.4
(0.6)
P 		54.5
(-0.4)
P 		39.1
(-3)
P 		41.4
(-2.6)
P 		74.8
(3)
P 		36
B 127.8
(2.4)
P 		85.6
(-0.2)
P 		40.8
(-3)
P 		45.1
(-2.7)
P 		46.9
(-2.6)
P 		138
(3)
P 		97
C 143.7
(3)
P 		58.8
(-1.5)
P 		44.1
(-2.3)
P 		31.1
(-3)
P 		35.6
(-2.8)
P 		119.2
(1.7)
P 		113
avr 114.6
(3) 		68.3
(-0.6) 		46.5
(-2.4) 		38.4
(-3) 		41.3
(-2.8) 		110.7
(2.7) 		76
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188618_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15272
Sequence Type Exemplar sequence
Representative Public ID Y46H3D.6 NCBI
Target Description Y46H3D.6 /REP_DB=WormBase Gene ID /WP=CE24323 /GB=AAK72309.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071059(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071059 NCBI Caenorhabditis elegans Y46H3D.6 (Y46H3D.6) mRNA, complete cds. 11/11 None
SNAP00000018925 ENSEMBL cdna:SNAP chromosome:CEL140:V:1625054:1625797:-1 11/11 None
GENEFINDER00000018938 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1625054:1626647:-1 11/11 None
Y46H3D.6 ENSEMBL cdna:known chromosome:CEL140:V:1625054:1626647:-1 gene:Y46H3D.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1625053-1626647(-) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Gene Symbol nhr-237
Ensembl Y46H3D.6
Entrez Gene 189970 Entrez gene
SwissProt Q966B8 EMBL-EBI
WormBase CE24323 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503460 Y46H3D.6 [Caenorhabditis elegans] gb|AAK72309.1| Hypothetical protein Y46H3D.6 [Caenorhabditis elegans] 0.0
blast NP_503460 Y46H3D.6 [Caenorhabditis elegans] gb|AAK72309.1| Hypothetical protein Y46H3D.6 [Caenorhabditis elegans] 1.0E-122
blast CAE65524 Hypothetical protein CBG10499 [Caenorhabditis briggsae] 7.0E-87
blast AAG15132 nuclear receptor NHR-42 [Caenorhabditis elegans] 2.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 3.8E-6
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 4.2E-11
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 3.8E-6
Sequence
Target Sequence 
>C. ELEGANS:188618_AT
agtatctcaacatttcacttccatttttcaatcgttaaccccaatcagtgaagcccagaa
agtcacactcggagaatactttactgttccatttgtattacttgatggatcataccgatc
ggttgaaagtgattatattgttttccctaatggagattatgtagacgcccagaacatcga
tgctttttatcaaaatcctgatgaaaaagatgaatcaattggatcaagtgtcgcgagtat
tttggaaccatactggaggcttcaccatcaaactctctgggagcagatgaaaaaagttaa
gcccagtctaattgaatttctggttttgagtgcatttatattctgggactttggactaca
aggtcaaagtgaagaatgcattaaagtgtgcaatcaactccgtgctagagtaaatgcaga
gttatcgacgtatgagaaaacgttttatactgctggagactattcgctgcgagttgctga
agtcgtatatctactccaaagcgttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTATCTCAACATTTCACTTCCATT 402 63 435 Antisense
TCGTTAACCCCAATCAGTGAAGCCC 368 603 466 Antisense
GAAGCCCAGAAAGTCACACTCGGAG 83 345 484 Antisense
GAGAATACTTTACTGTTCCATTTGT 346 389 506 Antisense
GTAGACGCCCAGAACATCGATGCTT 357 457 595 Antisense
GGAACCATACTGGAGGCTTCACCAT 577 529 678 Antisense
GCTTCACCATCAAACTCTCTGGGAG 301 305 693 Antisense
GTGTGCAATCAACTCCGTGCTAGAG 40 487 820 Antisense
TACTGCTGGAGACTATTCGCTGCGA 377 645 882 Antisense
TTCGCTGCGAGTTGCTGAAGTCGTA 101 679 897 Antisense
TCGTATATCTACTCCAAAGCGTTCA 465 599 917 Antisense
Sequence Source Affymetrix Proprietary Database