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[188617_s_at]

Description K02F2.1 /REP_DB=WormBase Gene ID /WP=CE17153 /TR=O44987 /GB=AAB97564.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=peptidase
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 66      4grp_highest_8_8 > 43      4grp_high_8_8 > 32      6grp_highest_nonorm > 77      6grp_total > 57      4grp_total > 55      6grp_highest_sub > Da      6grp_cgc > 37      6grp_high1_sub > Da      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 716
1 2 3 4 range
A 1490.5
(3)
P 		775
(-3)
P 		1092.8
(-0.3)
P 		1088.3
(-0.4)
P 		716
B 1467.1
(3)
P 		1045.2
(-0.8)
P 		809.4
(-3)
P 		858.9
(-2.5)
P 		658
C 1366
(3)
P 		885.3
(-2.7)
P 		1183
(0.8)
P 		860.8
(-3)
P 		505
avr 1441.2
(3) 		901.8
(-3) 		1028.4
(-1.6) 		936
(-2.6) 		539

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 639
1 2 3 4 5 6 range
A 1345.9
(-1.1)
P 		1361.1
(-0.8)
P 		1209.7
(-3)
P 		1628.8
(3)
P 		1259.7
(-2.3)
P 		1464.3
(0.6)
P 		419
B 1530.9
(-0.2)
P 		1372.2
(-1.8)
P 		1452.5
(-1)
P 		1511.7
(-0.4)
P 		1260.4
(-3)
P 		1839.7
(3)
P 		579
C 1488.7
(-1.5)
P 		1402.4
(-2.5)
P 		1531.3
(-0.9)
P 		1507.3
(-1.2)
P 		1364.3
(-3)
P 		1849.1
(3)
P 		485
avr 1455.2
(-0.7) 		1378.6
(-1.8) 		1397.8
(-1.5) 		1549.3
(0.6) 		1294.8
(-3) 		1717.7
(3) 		423
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 398
1 2 3 4 range
A 542.7
(3)
P 		168.2
(-2.9)
P 		285.7
(-1)
P 		159.3
(-3)
P 		383
B 467.8
(3)
P 		258.1
(-1.4)
P 		187.6
(-2.9)
P 		183
(-3)
P 		285
C 452.2
(3)
P 		254.5
(-0.9)
P 		412.3
(2.2)
P 		145.1
(-3)
P 		307
avr 487.6
(3) 		226.9
(-1.8) 		295.2
(-0.6) 		162.5
(-3) 		325

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 438
1 2 3 4 5 6 range
A 248.1
(-3)
P 		484.1
(3)
P 		263.5
(-2.6)
P 		413.1
(1.2)
P 		380.1
(0.4)
P 		356.5
(-0.2)
P 		236
B 532.7
(0.2)
P 		456.8
(-1.1)
P 		352.7
(-3)
P 		400.4
(-2.1)
P 		512.1
(-0.1)
P 		686
(3)
P 		333
C 551.8
(1.7)
P 		427.9
(-0.6)
P 		389.8
(-1.4)
P 		303.1
(-3)
P 		441.5
(-0.4)
P 		619
(3)
P 		316
avr 444.2
(-0) 		456.3
(0.3) 		335.3
(-3) 		372.2
(-2) 		444.6
(0) 		553.8
(3) 		219
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188617_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.493
Sequence Type Exemplar sequence
Representative Public ID K02F2.1 NCBI
Target Description K02F2.1 /REP_DB=WormBase Gene ID /WP=CE17153 /TR=O44987 /GB=AAB97564.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=peptidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059556(11), NM_059555(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059556 NCBI Caenorhabditis elegans K02F2.1b (peptidase) mRNA, complete cds. 11/11 None
NM_059555 NCBI Caenorhabditis elegans K02F2.1a (peptidase) mRNA, complete cds. 11/11 None
GENEFINDER00000019142 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6850273:6851232:1 11/11 None
SNAP00000019133 ENSEMBL cdna:SNAP chromosome:CEL140:I:6850430:6851232:1 9/11 None
K02F2.1b ENSEMBL cdna:known chromosome:CEL140:I:6846486:6851475:1 gene:K02F2.1 11/11 None
K02F2.1a ENSEMBL cdna:known chromosome:CEL140:I:6846486:6851232:1 gene:K02F2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6846416-6851163(+) 100.0 100.0
Public Domain and Genome References
Ensembl K02F2.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84627 Dipeptidyl peptidase four (iv) family protein 3, isoform b [Caenorhabditis elegans] ref|NP_491957.1| K02F2.1b [Caenorhabditis elegans] 0.0
blast AAB97564 Dipeptidyl peptidase four (iv) family protein 3, isoform a [Caenorhabditis elegans] ref|NP_491956.1| K02F2.1a [Caenorhabditis elegans] 0.0
blast CAE67302 Hypothetical protein CBG12755 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001375 EMBL-EBI Peptidase S9, prolyl oligopeptidase active site region 6.8E-9
Pfam IPR001375 EMBL-EBI Peptidase S9, prolyl oligopeptidase active site region 6.8E-9
Pfam IPR001375 EMBL-EBI Peptidase S9, prolyl oligopeptidase active site region 6.8E-9
Pfam IPR001375 EMBL-EBI Peptidase S9, prolyl oligopeptidase active site region 1.3E-4
Sequence
Target Sequence 
>C. ELEGANS:188617_S_AT
ggatatgtcgtcgttttcattgataatcgcggttcggcgcatcgtggaatagagtttgag
cgtcatatacacaagaaaatgggaactgttgaagtggaagatcaagtggaaggactccag
atgcttgctgaacgaactggtggttttatggatatgagtcgtgtggttgttcatggatgg
agttatggtggatatatggctcttcaaatgattgctaaacatcctaatatttatcgtgct
gctattgccggtggagctgtctcagattggcgtctctatgatactgcctacactgaacga
tatatgggatatccactcgaagaacatgtttatggtgcgagctcgataactggattagtt
gaaaaactgcccgacgaaccaaatcgtttaatgttggttcatggattgatggatgagaat
gttcattttgcacatttaacacatcttgttgatgagtgtattaaaaaaggaaaatggcat
gagttggtgatcttcccaaatgagcgtcatggtgttcgtaacaacgatgcaagtatttat
ctggatgcccgtatgatgtatttcgctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATATGTCGTCGTTTTCATTGATA 151 511 2182 Antisense
TTGATAATCGCGGTTCGGCGCATCG 519 703 2201 Antisense
GAAGGACTCCAGATGCTTGCTGAAC 524 333 2290 Antisense
GAGTCGTGTGGTTGTTCATGGATGG 654 399 2337 Antisense
GGTGGAGCTGTCTCAGATTGGCGTC 24 499 2431 Antisense
GATTGGCGTCTCTATGATACTGCCT 485 435 2446 Antisense
GATACTGCCTACACTGAACGATATA 139 425 2461 Antisense
GGGATATCCACTCGAAGAACATGTT 630 495 2487 Antisense
AACATGTTTATGGTGCGAGCTCGAT 602 137 2504 Antisense
ATGAGCGTCATGGTGTTCGTAACAA 278 45 2681 Antisense
GATGCCCGTATGATGTATTTCGCTC 282 415 2725 Antisense
Sequence Source Affymetrix Proprietary Database