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[188613_at] esterase

Description T28C12.5 /REP_DB=WormBase Gene ID /WP=CE14347 /TR=O16694 /GB=AAB66162.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=esterase
Cluster 6grp_total > 05      4grp_total > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 24.7
(0.7)
A 		3
(-3)
A 		38.5
(3)
A 		5.2
(-2.6)
A 		36
B 4.3
(-1)
A 		2.8
(-3)
A 		7.4
(3)
A 		6.5
(1.8)
A 		5
C 7.1
(-2.7)
A 		7.6
(-2.6)
A 		5
(-3)
A 		45.4
(3)
A 		40
avr 12
(0.1) 		4.5
(-3) 		17
(2.2) 		19
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 67.5
(3)
A 		3.8
(-3)
A 		4.4
(-2.9)
A 		3.7
(-3)
A 		29.5
(-0.6)
A 		5.1
(-2.9)
A 		64
B 6.4
(-1.9)
A 		11
(-0.9)
A 		28.2
(3)
A 		4.1
(-2.4)
A 		8
(-1.5)
A 		1.5
(-3)
A 		27
C 19.2
(-1)
A 		52.6
(3)
A 		4
(-2.8)
A 		4.2
(-2.8)
A 		3.6
(-2.8)
A 		2.1
(-3)
A 		51
avr 31
(3) 		22.5
(1.2) 		12.2
(-1) 		4
(-2.8) 		13.7
(-0.7) 		2.9
(-3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 9
(2.3)
A 		0.6
(-3)
A 		10.1
(3)
A 		0.8
(-2.9)
A 		10
B 1.4
(1.2)
A 		0.7
(-3)
A 		1.7
(3)
A 		1.4
(1.2)
A 		1
C 2.3
(-2.4)
A 		2.2
(-2.5)
A 		1.7
(-3)
A 		7.6
(3)
A 		6
avr 4.2
(2.5) 		1.2
(-3) 		4.5
(3) 		3.3
(0.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 12.4
(3)
A 		1.3
(-2.8)
A 		1
(-2.9)
A 		0.9
(-3)
A 		8.9
(1.2)
A 		1.2
(-2.8)
A 		12
B 2.2
(-1.5)
A 		3.7
(0)
A 		6.8
(3)
A 		1.1
(-2.5)
A 		3.3
(-0.4)
A 		0.6
(-3)
A 		6
C 7.1
(-0.5)
A 		16
(3)
A 		1
(-2.9)
A 		0.8
(-3)
A 		1.2
(-2.8)
A 		0.7
(-3)
A 		15
avr 7.2
(3) 		7
(2.8) 		2.9
(-1) 		0.9
(-2.9) 		4.5
(0.5) 		0.8
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188613_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12131
Sequence Type Exemplar sequence
Representative Public ID T28C12.5 NCBI
Target Description T28C12.5 /REP_DB=WormBase Gene ID /WP=CE14347 /TR=O16694 /GB=AAB66162.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=esterase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072211(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072211 NCBI Caenorhabditis elegans T28C12.5 (esterase) mRNA, complete cds. 11/11 A 
SNAP00000017143 ENSEMBL cdna:SNAP chromosome:CEL140:V:6316770:6319061:1 11/11 None
GENEFINDER00000017155 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6316770:6319061:1 11/11 None
T28C12.5 ENSEMBL cdna:known chromosome:CEL140:V:6316770:6319061:1 gene:T28C12.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6316769-6319061(+) 100.0 100.0
Public Domain and Genome References
Gene Title esterase
Ensembl T28C12.5
Entrez Gene 189039 Entrez gene
SwissProt O16694 EMBL-EBI
WormBase CE14347 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66162 Hypothetical protein T28C12.5 [Caenorhabditis elegans] ref|NP_504612.1| T28C12.5 [Caenorhabditis elegans] 0.0
blast AAB66160 Hypothetical protein T28C12.4b [Caenorhabditis elegans] ref|NP_504614.1| T28C12.4b [Caenorhabditis elegans] pir||F89068 protein T28C12.4b [imported] - Caenorhabditis elegans 0.0
blast AAB66159 Hypothetical protein T28C12.4a [Caenorhabditis elegans] ref|NP_504613.1| T28C12.4a [Caenorhabditis elegans] pir||T32053 hypothetical protein T28C12.4a - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.9E-38
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.7E-64
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 7.4E-29
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 2.1E-37
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.6E-106
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 8.6E-39
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 3.9E-79
Sequence
Target Sequence 
>C. ELEGANS:188613_AT
aacggattatccaggtcaaaaatcgaaacgatgaccgagaaggtttatggtgattcgcca
gcactgagagcagacttgaaagccagaaaaatgctttttgtgcagctcatttccgacatt
ttcgccaactatgggatctatcggtttatgagagactgccaacagcgaagtgtcgaatgc
tatggctattcatttgaccatcgaagtaaacgaatgtggggatggctacagcacgtggct
ccatttaccggtggaactcatacctctgaaattacttacctgtttgactgcaatgccttg
tccacgccacttggaatgagcaaaactgacaaagtagttagtggaatgaccgccgattac
tatacaaacttcgtcaagtttggaacaccaaacggactaaattcccaattaccaaaatgg
gaacggatttcaccagacgatgagcacatgaaattgatcagtataaaaccagaaccagaa
atgaaaacggtagtttatggatatcgcatgcaacactttgaagattgtctccaacaaccc
gaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGGATTATCCAGGTCAAAAATCG 106 39 1027 Antisense
TGCTTTTTGTGCAGCTCATTTCCGA 706 579 1118 Antisense
TTTCGCCAACTATGGGATCTATCGG 182 669 1146 Antisense
TCATACCTCTGAAATTACTTACCTG 220 619 1284 Antisense
GAAATTACTTACCTGTTTGACTGCA 525 361 1294 Antisense
TGTTTGACTGCAATGCCTTGTCCAC 390 561 1307 Antisense
CCTTGTCCACGCCACTTGGAATGAG 487 269 1322 Antisense
AAAACGGTAGTTTATGGATATCGCA 509 129 1510 Antisense
ATGGATATCGCATGCAACACTTTGA 507 51 1523 Antisense
GCAACACTTTGAAGATTGTCTCCAA 564 319 1536 Antisense
AAGATTGTCTCCAACAACCCGAAGT 139 157 1547 Antisense
Sequence Source Affymetrix Proprietary Database