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[188612_at] zinc finger prtoein

Description C55B7.12 /REP_DB=WormBase Gene ID /WP=CE09023 /GB=AAK68272.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=zinc finger prtoein
Cluster 6grp_high1_10_10 > 10      4grp_high_8_8 > 45      6grp_total > 33      4grp_total > 42      6grp_cgc > 80      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 42.6
(-3)
P 		91.4
(3)
P 		71.4
(0.5)
P 		81.2
(1.7)
A 		49
B 71.6
(3)
P 		66.1
(1.4)
P 		64.1
(0.8)
P 		51.4
(-3)
P 		20
C 89.6
(3)
P 		77.2
(-3)
P 		78.3
(-2.5)
P 		81.2
(-1.1)
P 		12
avr 67.9
(-3) 		78.2
(3) 		71.3
(-1) 		71.3
(-1) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 86.6
(3)
P 		56.2
(-1)
P 		54.3
(-1.2)
A 		45.1
(-2.4)
A 		56.6
(-0.9)
A 		40.9
(-3)
A 		46
B 58.1
(-0.1)
A 		51.9
(-1)
P 		70.9
(1.7)
P 		80.1
(3)
P 		37.5
(-3)
P 		46.1
(-1.8)
P 		43
C 50.5
(-0.9)
P 		40.4
(-3)
P 		69.5
(3)
P 		40.3
(-3)
A 		43.1
(-2.4)
P 		48
(-1.4)
A 		29
avr 65.1
(3) 		49.5
(-1.7) 		64.9
(2.9) 		55.2
(0) 		45.7
(-2.8) 		45
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 15.5
(-0.3)
P 		19.8
(3)
P 		18.7
(2.2)
P 		11.9
(-3)
A 		8
B 22.8
(3)
P 		16.3
(-0.3)
P 		14.9
(-1)
P 		10.9
(-3)
P 		12
C 29.6
(3)
P 		22.2
(0.2)
P 		27.3
(2.1)
P 		13.7
(-3)
P 		16
avr 22.6
(3) 		19.4
(1.2) 		20.3
(1.7) 		12.2
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 16
(0.6)
P 		20
(3)
P 		11.8
(-1.9)
A 		11.4
(-2.2)
A 		17.1
(1.3)
A 		10
(-3)
A 		10
B 20.2
(2)
A 		17.3
(-0.9)
P 		17.2
(-1)
P 		21.2
(3)
P 		15.2
(-3)
P 		17.2
(-1)
P 		6
C 18.7
(3)
P 		12.3
(-0.6)
P 		17.7
(2.4)
P 		8.1
(-3)
A 		13.9
(0.3)
P 		16.1
(1.5)
A 		11
avr 18.3
(3) 		16.5
(0.7) 		15.6
(-0.4) 		13.6
(-3) 		15.4
(-0.7) 		14.4
(-2) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188612_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1295
Sequence Type Exemplar sequence
Representative Public ID C55B7.12 NCBI
Target Description C55B7.12 /REP_DB=WormBase Gene ID /WP=CE09023 /GB=AAK68272.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=zinc finger prtoein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059476(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059476 NCBI Caenorhabditis elegans abnormal CHEmotaxis family member (che-1) (che-1) mRNA, complete cds. 9/11 None
GENEFINDER00000038306 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6525709:6528261:-1 9/11 None
C55B7.12 ENSEMBL cdna:known chromosome:CEL140:I:6525709:6529013:-1 gene:C55B7.12 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038305 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6525637-6528942(-) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger prtoein
Gene Symbol che-1
Ensembl C55B7.12
Entrez Gene 183847 Entrez gene
SwissProt Q966L8 EMBL-EBI
WormBase CE34280 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1623923_A_AT glass dm
DROSGENOME1:152797_AT glass dm
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast Q966L8 Transcription factor che-1 (Abnormal chemotaxis protein 1) 1.0E-140
blast NP_491877 abnormal CHEmotaxis family member (che-1) [Caenorhabditis elegans] gb|AAK68272.2| Abnormal chemotaxis protein 1 [Caenorhabditis elegans] 1.0E-121
blast Q966L8 Transcription factor che-1 (Abnormal chemotaxis protein 1) 1.0E-104
blast CAE67235 Hypothetical protein CBG12674 [Caenorhabditis briggsae] 3.0E-96
blast NP_491877 abnormal CHEmotaxis family member (che-1) [Caenorhabditis elegans] gb|AAK68272.2| Abnormal chemotaxis protein 1 [Caenorhabditis elegans] 4.0E-81
blast CAE67235 Hypothetical protein CBG12674 [Caenorhabditis briggsae] 6.0E-75
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 3.7E-7
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 9.0E-7
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 4.2E-7
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.4E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 3.7E-7
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 4.2E-7
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.4E-5
Sequence
Target Sequence 
>C. ELEGANS:188612_AT
gaattccacgtcgtcatggtcgattggaaatcagttggaaatggagaatgggacattaac
catgagtcatggtgcaacgaatgatggaaatattcgaaataatcaacaaatgatgacatc
aaatcatataactacagactcttttcgtcagatccctccatccggtctctgttatatgga
tccaactccatctcttcgccttccaaagaaagaacctcttccagtacaacgaccaatggc
aagatctacaccaaaacctttcagatgtcaaacttgtggaaaagcattctctcaagcagc
taatctaacagctcacaaaagaattcatacaggagaaaaaccatttatgtgtcctgtatg
taatcgtccattttctcaaagttcttctcttgttactcatcgaagaacacacactggaga
gagaccgtatccatgtgctcaatgtgagaaggcattcaccgacagctcaactcttacaaa
aca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTCCACGTCGTCATGGTCGATT 67 325 267 Antisense
TACAGACTCTTTTCGTCAGATCCCT 465 643 399 Antisense
CCTCCATCCGGTCTCTGTTATATGG 371 267 421 Antisense
CATCTCTTCGCCTTCCAAAGAAAGA 512 211 455 Antisense
AAGCATTCTCTCAAGCAGCTAATCT 59 149 548 Antisense
TATGTGTCCTGTATGTAATCGTCCA 489 655 612 Antisense
AATCGTCCATTTTCTCAAAGTTCTT 418 165 628 Antisense
CAAAGTTCTTCTCTTGTTACTCATC 141 193 643 Antisense
GAGAGACCGTATCCATGTGCTCAAT 375 395 685 Antisense
GTGAGAAGGCATTCACCGACAGCTC 455 483 710 Antisense
CCGACAGCTCAACTCTTACAAAACA 292 263 725 Antisense
Sequence Source Affymetrix Proprietary Database