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[188609_s_at] peroxidase

Description K09C8.5 /REP_DB=WormBase Gene ID /WP=CE18882 /TR=Q21043 /GB=CAA91999.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=peroxidase
Cluster 6grp_highest_10_10 > 31      6grp_high1_10_10 > 03      4grp_high_8_8 > 51      6grp_highest_nonorm > 90      6grp_total > 24      4grp_total > 52      6grp_highest_sub > De      6grp_cgc > 33      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 184
1 2 3 4 range
A 191.5
(1.9)
P 		218.5
(3)
P 		179.9
(1.4)
P 		73.1
(-3)
A 		145
B 173.6
(2)
P 		202.4
(3)
P 		181.3
(2.2)
P 		34.1
(-3)
A 		168
C 204.9
(3)
P 		197.5
(2.6)
P 		170.8
(1.4)
P 		80.7
(-3)
P 		124
avr 190
(2.3) 		206.1
(3) 		177.3
(1.8) 		62.6
(-3) 		144

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 168
1 2 3 4 5 6 range
A 184.7
(3)
P 		178
(2.6)
P 		111.9
(-1)
P 		138.4
(0.5)
P 		74.6
(-3)
P 		89.8
(-2.2)
P 		110
B 220.4
(3)
P 		186.8
(1.7)
P 		193.5
(2)
P 		86.1
(-2.2)
P 		65.6
(-3)
P 		77.2
(-2.6)
P 		155
C 233.8
(3)
P 		230.8
(2.9)
P 		168.3
(0.5)
P 		103.5
(-1.9)
P 		87.7
(-2.5)
P 		73.7
(-3)
P 		160
avr 213
(3) 		198.5
(2.4) 		157.9
(0.6) 		109.3
(-1.5) 		76
(-3) 		80.2
(-2.8) 		137
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 69.7
(3)
P 		47.4
(0.7)
P 		47
(0.7)
P 		10.7
(-3)
A 		59
B 55.4
(3)
P 		50
(2.3)
P 		42
(1.3)
P 		7.3
(-3)
A 		48
C 67.8
(3)
P 		56.8
(1.8)
P 		59.5
(2.1)
P 		13.6
(-3)
P 		54
avr 64.3
(3) 		51.4
(1.6) 		49.5
(1.3) 		10.5
(-3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 34.1
(-1.2)
P 		63.3
(3)
P 		24.4
(-2.6)
P 		35.1
(-1.1)
P 		22.5
(-2.9)
P 		21.9
(-3)
P 		41
B 76.7
(3)
P 		62.2
(1.4)
P 		47
(-0.3)
P 		22.8
(-3)
P 		26.7
(-2.6)
P 		28.8
(-2.3)
P 		54
C 86.7
(3)
P 		70.4
(1.5)
P 		42.8
(-1)
P 		20.8
(-3)
P 		28.4
(-2.3)
P 		24.7
(-2.6)
P 		66
avr 65.8
(3) 		65.3
(2.9) 		38.1
(-1.1) 		26.2
(-2.8) 		25.9
(-2.9) 		25.1
(-3) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188609_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17049
Sequence Type Exemplar sequence
Representative Public ID K09C8.5 NCBI
Target Description K09C8.5 /REP_DB=WormBase Gene ID /WP=CE18882 /TR=Q21043 /GB=CAA91999.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=peroxidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077433(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077433 NCBI Caenorhabditis elegans K09C8.5 (peroxidase) mRNA, complete cds. 11/11 None
SNAP00000014657 ENSEMBL cdna:SNAP chromosome:CEL140:X:10972194:10976592:-1 11/11 None
K09C8.5 ENSEMBL cdna:known chromosome:CEL140:X:10972107:10979187:-1 gene:K09C8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10972193-10979187(-) 100.0 100.0
Public Domain and Genome References
Gene Title peroxidase
Gene Symbol pxn-2
Ensembl K09C8.5
Entrez Gene 181288 Entrez gene
SwissProt Q21043 EMBL-EBI
WormBase CE18882 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1629847_AT Peroxidasin dm
DROSOPHILA_2:1640097_AT Peroxidasin dm
DROSGENOME1:152747_AT Peroxidasin dm
CHICKEN:GGA.14241.1.S1_S_AT peroxidasin homolog (Drosophila) gga
CHICKEN:GGAAFFX.10486.1.S1_S_AT peroxidasin homolog (Drosophila) gga
CHICKEN:GGAAFFX.24944.1.S1_AT peroxidasin homolog (Drosophila) gga
CHICKEN:GGAAFFX.24944.3.S1_S_AT peroxidasin homolog (Drosophila) gga
HG-U133_PLUS_2:212012_AT peroxidasin homolog (Drosophila) hs
HG-U133A_2:212012_AT peroxidasin homolog (Drosophila) hs
HG-U133A:212012_AT peroxidasin homolog (Drosophila) hs
HG-U133_PLUS_2:212013_AT peroxidasin homolog (Drosophila) hs
HG-U133A_2:212013_AT peroxidasin homolog (Drosophila) hs
HG-U133A:212013_AT peroxidasin homolog (Drosophila) hs
HU35KSUBA:W01094_AT peroxidasin homolog (Drosophila) hs
HUGENEFL:D86983_AT peroxidasin homolog (Drosophila) hs
U133_X3P:HS.118893.0.S2_3P_AT peroxidasin homolog (Drosophila) hs
U133_X3P:HS.118893.0.S1_3P_AT peroxidasin homolog (Drosophila) hs
HG-U95AV2:39327_AT peroxidasin homolog (Drosophila) hs
HG-U95C:65963_AT peroxidasin homolog (Drosophila) hs
MG-U74BV2:107575_AT RIKEN cDNA 2310075M15 gene mm
MOE430B:1428259_AT RIKEN cDNA 2310075M15 gene mm
MOUSE430_2:1428259_AT RIKEN cDNA 2310075M15 gene mm
MU19KSUBA:TC14312_AT RIKEN cDNA 2310075M15 gene mm
MU19KSUBA:TC14312_G_AT RIKEN cDNA 2310075M15 gene mm
MU19KSUBA:TC14313_AT RIKEN cDNA 2310075M15 gene mm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4601 peroxidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91999 Hypothetical protein K09C8.5 [Caenorhabditis elegans] emb|CAA91994.1| Hypothetical protein K09C8.5 [Caenorhabditis elegans] ref|NP_509834.1| K09C8.5 [Caenorhabditis elegans] 0.0
blast CAE70782 Hypothetical protein CBG17537 [Caenorhabditis briggsae] 0.0
blast CAE58397 Hypothetical protein CBG01526 [Caenorhabditis briggsae] 0.0
blast AAB88610 Peroxidasin (drosophila peroxidase) homolog protein 1 [Caenorhabditis elegans] ref|NP_505188.2| ZK994.3 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.62
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 9.1E-5
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.025
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 1.0E-126
Pfam IPR000372 EMBL-EBI Cysteine-rich flanking region, N-terminal 1.2E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 9.5E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.0E-11
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:188609_S_AT
tcatttcaaaactgcaatccctctacggtgtcacagagaacattgatctttgggttggag
gtgttactgaaaagagaactgctgacgcgttgatgggaccaacacttgcgtgtataattg
ctgatcaattcaaacgcctgagagatggggatagattttggtatgagaatgaagaaatgt
tctcaaaggctcaacttcgacaaatcaagaaagttacattgtcaaagatcatatgcacaa
acggtgacgacattgaccgaattcagagagatattttcgtatatcacggtaacagcacac
aattctatgagccctgtgagtcattaccggaaatcaacttgaacatgtggacaacatgtt
gcgatgcaatgtgctcatcaagctcaacgttggctcgcaatgcaattggtggcgatgaaa
aagctaaacggcggaagagacgacatcaccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATTTCAAAACTGCAATCCCTCTA 39 621 3404 Antisense
CAATCCCTCTACGGTGTCACAGAGA 76 183 3418 Antisense
GAACTGCTGACGCGTTGATGGGACC 413 349 3479 Antisense
TTGATGGGACCAACACTTGCGTGTA 655 701 3493 Antisense
GTTCTCAAAGGCTCAACTTCGACAA 95 443 3582 Antisense
GGTGACGACATTGACCGAATTCAGA 63 501 3646 Antisense
AACAGCACACAATTCTATGAGCCCT 221 137 3694 Antisense
TATGAGCCCTGTGAGTCATTACCGG 452 655 3709 Antisense
AATGTGCTCATCAAGCTCAACGTTG 227 163 3771 Antisense
CTCAACGTTGGCTCGCAATGCAATT 241 227 3786 Antisense
ACGGCGGAAGAGACGACATCACCAC 37 97 3831 Antisense
Sequence Source Affymetrix Proprietary Database