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[188608_at] chitinase

Description T05H4.7 /REP_DB=WormBase Gene ID /WP=CE13281 /TR=O16512 /GB=AAB66013.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chitinase
Cluster 6grp_total > 83      4grp_total > 48      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 341
1 2 3 4 range
A 18.7
(-3)
A 		227.7
(1.2)
A 		315.1
(3)
A 		79.2
(-1.8)
A 		296
B 38.8
(-2.6)
A 		229.7
(0.7)
A 		358.9
(3)
A 		17.6
(-3)
A 		341
C 20.9
(-3)
A 		245.1
(1.7)
A 		305
(3)
A 		65.3
(-2.1)
A 		284
avr 26.1
(-3) 		234.2
(1.2) 		326.3
(3) 		54
(-2.4) 		300

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 165
1 2 3 4 5 6 range
A 74.2
(-3)
A 		109.1
(-1.1)
A 		162
(1.7)
A 		173.7
(2.3)
A 		186.6
(3)
A 		149.7
(1)
A 		112
B 87.2
(-3)
A 		158.6
(0.5)
A 		162.6
(0.7)
A 		125.8
(-1.1)
A 		211.1
(3)
A 		155.4
(0.3)
A 		124
C 66.2
(-3)
A 		231.3
(3)
A 		107
(-1.5)
A 		127.7
(-0.8)
A 		111.6
(-1.4)
A 		178.4
(1.1)
A 		165
avr 75.9
(-3) 		166.3
(2.8) 		143.9
(1.3) 		142.4
(1.2) 		169.8
(3) 		161.2
(2.5) 		94
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 6.8
(-3)
A 		49.4
(0.4)
A 		82.4
(3)
A 		11.6
(-2.6)
A 		76
B 12.4
(-2.4)
A 		56.7
(1)
A 		83.2
(3)
A 		3.8
(-3)
A 		79
C 6.9
(-3)
A 		70.5
(0.8)
A 		106.3
(3)
A 		11
(-2.8)
A 		99
avr 8.7
(-3) 		58.9
(0.7) 		90.6
(3) 		8.8
(-3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 13.7
(-3)
A 		38.8
(0.5)
A 		35.3
(0)
A 		44
(1.3)
A 		56.3
(3)
A 		36.5
(0.2)
A 		43
B 30.3
(-3)
A 		52.8
(-0.6)
A 		39.5
(-2)
A 		33.3
(-2.7)
A 		85.8
(3)
A 		58
(-0)
A 		56
C 24.6
(-3)
A 		70.6
(3)
A 		27.2
(-2.7)
A 		25.7
(-2.9)
A 		36.1
(-1.5)
A 		59.7
(1.6)
A 		46
avr 22.9
(-3) 		54.1
(2.1) 		34
(-1.2) 		34.3
(-1.1) 		59.4
(3) 		51.4
(1.7) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188608_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11927
Sequence Type Exemplar sequence
Representative Public ID T05H4.7 NCBI
Target Description T05H4.7 /REP_DB=WormBase Gene ID /WP=CE13281 /TR=O16512 /GB=AAB66013.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chitinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072227(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072227 NCBI Caenorhabditis elegans T05H4.7 (chitinase) mRNA, complete cds. 11/11 None
SNAP00000040300 ENSEMBL cdna:SNAP chromosome:CEL140:V:6417587:6420023:1 11/11 None
GENEFINDER00000040322 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6417587:6420023:1 11/11 None
T05H4.7 ENSEMBL cdna:known chromosome:CEL140:V:6417587:6420023:1 gene:T05H4.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6417586-6420023(+) 100.0 100.0
Public Domain and Genome References
Gene Title chitinase
Ensembl T05H4.7
Entrez Gene 188151 Entrez gene
SwissProt O16512 EMBL-EBI
WormBase CE13281 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:13211_S_AT basic endochitinase at
ATGENOME1:12332_S_AT basic endochitinase at
ATH1-121501:256243_AT basic endochitinase at
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6032 chitin catabolism inferred from electronic annotation QuickGO AmiGO
9613 response to pest, pathogen or parasite inferred from electronic annotation QuickGO AmiGO
16998 cell wall catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4568 chitinase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504628 T05H4.7 [Caenorhabditis elegans] gb|AAB66013.1| Hypothetical protein T05H4.7 [Caenorhabditis elegans] 0.0
blast CAE71873 Hypothetical protein CBG18928 [Caenorhabditis briggsae] 0.0
blast AAK93964 putative chitinase [Ascaris suum] 1.0E-133
Protein Domains
Database ID Description E-Value
Pfam IPR000726 EMBL-EBI Glycoside hydrolase, family 19 3.5E-28
Sequence
Target Sequence 
>C. ELEGANS:188608_AT
ggatccaccacttgcaatgatggcatctttgtggttttatatgactcctcaaccaccaaa
accttcaatgcatcaaatagtaaccggcgactggaaaccgtcttcaaagaatcggagagc
cggatatcaaggagctatttttgggccaaccagtcttataatcaataatgaatgtggtgg
tgaagatccagatgagcctggaggtcccggagaatctcgaagaataaaagcattcaaatg
gttctgtaaatacttcaaagttccagttggctccgagagaacacttagctgtaaaggaat
gctggacggattcgacgctgttcaacacatgtactcttggcatccagattgggggaatat
gtggaaatctcaatcgtgtgattgtgctccggctccatatggtggtccacttccatacta
cgatccgaaactgtatccacacgaatttacaaaacaaaacgatcgaaatcgtttgcgatg
tgtctacagtatgtacgaaagcccagagacattccgacttgatgctggaaactcgccttg
cttgaagcata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATCCACCACTTGCAATGATGGCA 372 513 957 Antisense
TTATATGACTCCTCAACCACCAAAA 614 679 993 Antisense
CGGCGACTGGAAACCGTCTTCAAAG 636 213 1041 Antisense
CCTGGAGGTCCCGGAGAATCTCGAA 664 263 1153 Antisense
TGGACGGATTCGACGCTGTTCAACA 587 547 1259 Antisense
CAACACATGTACTCTTGGCATCCAG 389 189 1279 Antisense
GCTCCATATGGTGGTCCACTTCCAT 488 297 1348 Antisense
TCCACTTCCATACTACGATCCGAAA 210 589 1362 Antisense
ACGATCCGAAACTGTATCCACACGA 75 91 1376 Antisense
CGAAAGCCCAGAGACATTCCGACTT 609 251 1452 Antisense
GGAAACTCGCCTTGCTTGAAGCATA 41 529 1483 Antisense
Sequence Source Affymetrix Proprietary Database