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[188605_s_at]

Description B0024.14 /REP_DB=WormBase Gene ID /WP=CE25737 /GB=CAC35857.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=pro-collagen domains
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 23      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 21      6grp_total > 03      4grp_total > 12      6grp_cgc > 40      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2525
1 2 3 4 range
A 1533.3
(-0.1)
P 		654.8
(-3)
P 		705.5
(-2.8)
P 		2489.6
(3)
P 		1835
B 1171.6
(-1.7)
P 		951.8
(-2.3)
P 		645.4
(-3)
P 		3170.5
(3)
P 		2525
C 1411.5
(-0.8)
P 		951.8
(-2.4)
P 		763.8
(-3)
P 		2554.8
(3)
P 		1791
avr 1372.1
(-1) 		852.8
(-2.6) 		704.9
(-3) 		2738.3
(3) 		2033

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 905
1 2 3 4 5 6 range
A 1410.9
(2)
P 		1522.1
(3)
P 		928.8
(-2.3)
P 		1420.4
(2.1)
P 		933.8
(-2.2)
P 		848.7
(-3)
P 		673
B 1594
(2.8)
P 		1625.3
(3)
P 		1019.3
(-1.2)
P 		1388.5
(1.4)
P 		907
(-2)
P 		759.9
(-3)
P 		865
C 1541
(2.7)
P 		1587.9
(3)
P 		1476
(2.2)
P 		1532.7
(2.6)
P 		914
(-1.7)
P 		720
(-3)
P 		868
avr 1515.3
(2.5) 		1578.4
(3) 		1141.4
(-0.3) 		1447.2
(2) 		918.3
(-1.9) 		776.2
(-3) 		802
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 534
1 2 3 4 range
A 558.3
(3)
P 		142.1
(-3)
P 		184.4
(-2.4)
P 		364.4
(0.2)
P 		416
B 373.6
(-0.4)
P 		235.1
(-2)
P 		149.6
(-3)
P 		675.6
(3)
P 		526
C 467.2
(3)
P 		273.7
(-2.8)
P 		266.2
(-3)
P 		430.8
(1.9)
P 		201
avr 466.4
(2.5) 		217
(-2.7) 		200.1
(-3) 		490.3
(3) 		290

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 369
1 2 3 4 5 6 range
A 260.1
(-2)
P 		541.3
(3)
P 		202.3
(-3)
P 		360.2
(-0.2)
P 		281.8
(-1.6)
P 		206.6
(-2.9)
P 		339
B 554.6
(3)
P 		541
(2.7)
P 		247.5
(-3)
P 		367.8
(-0.6)
P 		368.5
(-0.6)
P 		283.4
(-2.3)
P 		307
C 571.2
(3)
P 		484.5
(1.4)
P 		375.7
(-0.6)
P 		308.2
(-1.8)
P 		295.8
(-2)
P 		241
(-3)
P 		330
avr 462
(1.7) 		522.3
(3) 		275.2
(-2.3) 		345.4
(-0.8) 		315.4
(-1.5) 		243.7
(-3) 		279
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188605_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12295
Sequence Type Exemplar sequence
Representative Public ID B0024.14 NCBI
Target Description B0024.14 /REP_DB=WormBase Gene ID /WP=CE25737 /GB=CAC35857.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=pro-collagen domains
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171530(11), NM_171935(11), NM_171529(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171530 NCBI Caenorhabditis elegans CRiM (Cysteine RIch motor neuron protein) homolog family member (crm-1) (crm-1) mRNA, complete cds. 11/11 None
NM_171935 NCBI Caenorhabditis elegans CRiM (Cysteine RIch motor neuron protein) homolog family member (crm-1) (crm-1) mRNA, complete cds. 11/11 None
NM_171529 NCBI Caenorhabditis elegans CRiM (Cysteine RIch motor neuron protein) homolog family member (crm-1) (crm-1) mRNA, complete cds. 11/11 None
SNAP00000027140 ENSEMBL cdna:SNAP chromosome:CEL140:V:10325149:10326181:-1 10/11 None
GENEFINDER00000027148 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10325149:10329023:-1 11/11 None
B0024.14a ENSEMBL cdna:known chromosome:CEL140:V:10324875:10331830:-1 gene:B0024.14 11/11 None
B0024.14d ENSEMBL cdna:known chromosome:CEL140:V:10324897:10331830:-1 gene:B0024.14 11/11 None
B0024.14b ENSEMBL cdna:known chromosome:CEL140:V:10325149:10334692:-1 gene:B0024.14 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171531 5/11 Cross Hyb Matching Probes None
NM_001026172 4/11 Cross Hyb Matching Probes None
B0024.14c.1 5/11 Cross Hyb Matching Probes None
B0024.14e 4/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179439 5 3 NM_171529 188605_s_at (11)
NM_171530 188605_s_at (11)
NM_171935 188605_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10325148-10329023(-) 100.0 100.0
Public Domain and Genome References
Ensembl B0024.14
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC35857 Hypothetical protein B0024.14a [Caenorhabditis elegans] emb|CAA94886.3| Hypothetical protein B0024.14a [Caenorhabditis elegans] ref|NP_741617.1| CRiM (Cysteine RIch motor neuron protein) homolog family member (crm-1) [Caenorhabditis elegans] 0.0
blast CAF32233 Hypothetical protein B0024.14d [Caenorhabditis elegans] emb|CAD44089.1| Hypothetical protein B0024.14d [Caenorhabditis elegans] ref|NP_741618.1| CRiM (Cysteine RIch motor neuron protein) homolog family member (crm-1) [Caenorhabditis elegans] 0.0
blast CAD44140 Hypothetical protein B0024.14b [Caenorhabditis elegans] emb|CAD44087.1| Hypothetical protein B0024.14b [Caenorhabditis elegans] ref|NP_741616.1| CRiM (Cysteine RIch motor neuron protein) homolog family member (crm-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004094 EMBL-EBI Antistasin 3.2E-9
Pfam IPR004094 EMBL-EBI Antistasin 8.7E-5
Pfam IPR004094 EMBL-EBI Antistasin 7.7E-8
Pfam IPR001007 EMBL-EBI von Willebrand factor, type C 8.2E-9
Pfam IPR001007 EMBL-EBI von Willebrand factor, type C 3.4E-8
Pfam IPR001007 EMBL-EBI von Willebrand factor, type C 3.7E-12
Pfam IPR001007 EMBL-EBI von Willebrand factor, type C 1.8E-10
Pfam IPR004094 EMBL-EBI Antistasin 3.2E-9
Pfam IPR004094 EMBL-EBI Antistasin 8.7E-5
Pfam IPR004094 EMBL-EBI Antistasin 7.7E-8
Pfam IPR001007 EMBL-EBI von Willebrand factor, type C 8.2E-9
Pfam IPR001007 EMBL-EBI von Willebrand factor, type C 3.4E-8
Pfam IPR001007 EMBL-EBI von Willebrand factor, type C 3.7E-12
Pfam IPR001007 EMBL-EBI von Willebrand factor, type C 1.8E-10
Pfam IPR001007 EMBL-EBI von Willebrand factor, type C 1.8E-10
Pfam IPR004094 EMBL-EBI Antistasin 3.2E-9
Pfam IPR004094 EMBL-EBI Antistasin 8.7E-5
Pfam IPR004094 EMBL-EBI Antistasin 7.7E-8
Pfam IPR001007 EMBL-EBI von Willebrand factor, type C 8.2E-9
Pfam IPR001007 EMBL-EBI von Willebrand factor, type C 3.4E-8
Pfam IPR001007 EMBL-EBI von Willebrand factor, type C 3.7E-12
Pfam IPR001007 EMBL-EBI von Willebrand factor, type C 1.8E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741617.1 1 760-782
NP_741618.1 1 760-782
NP_741616.1 1 826-848
B0024.14a 1 760-782
B0024.14d 1 760-782
B0024.14b 1 826-848
SNAP00000027140 1 162-184
GENEFINDER00000027148 1 741-763
Sequence
Target Sequence 
>C. ELEGANS:188605_S_AT
gtctgtcgtcagatggtttgtccacattgtgatgatcctgtaccaattgaaggacattgt
tgtccgctttgcaaagatgcaaaatggtctccatatggttatggaaatggttcagcatca
ttcccaacttctcttggaccaagagtggatgatggaaatggaagctctgctacttcgctg
attgttgtatctctgatgtctctttgcgtcgttgctctcattattgtgcttatgcttctc
tataaacgaaataagaaaagcaacaagctgcacaagttcaacgaagtcggccaaatagca
tcggggggagcatcaacagtaagactttcagcgtcaaaaacaattggatccatgccaaga
ctcgtggattggaaggacacgagagaagagtatgtaacacaaatcaaatactttattttt
aaaaaatatttcagaagtacggaggaattgttgaagacatcaactaatcatgttcgacac
gactcgcagaattcagatgatcaatcagacagtttgctttctacaatgagtgatacttcg
acagcaccttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTGTCGTCAGATGGTTTGTCCAC 613 471 2041 Antisense
GACATTGTTGTCCGCTTTGCAAAGA 93 371 2093 Antisense
AATGGTTCAGCATCATTCCCAACTT 668 159 2146 Antisense
CTCTGCTACTTCGCTGATTGTTGTA 685 231 2205 Antisense
TTGTATCTCTGATGTCTCTTTGCGT 650 707 2225 Antisense
CGTCGTTGCTCTCATTATTGTGCTT 94 247 2247 Antisense
ATTATTGTGCTTATGCTTCTCTATA 87 15 2260 Antisense
GAAGTCGGCCAAATAGCATCGGGGG 73 337 2323 Antisense
TTGGATCCATGCCAAGACTCGTGGA 220 709 2384 Antisense
GACACGACTCGCAGAATTCAGATGA 660 365 2516 Antisense
GAGTGATACTTCGACAGCACCTTCT 599 401 2568 Antisense
Sequence Source Affymetrix Proprietary Database