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[188602_at] AAA ATPase

Description K04G2.3 /REP_DB=WormBase Gene ID /WP=CE06097 /TR=Q21222 /GB=CAB00040.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=AAA ATPase
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 75      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 82      6grp_total > 66      4grp_total > 05      6grp_highest_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 419
1 2 3 4 range
A 330.5
(-0.3)
P 		165.5
(-3)
P 		231.1
(-1.9)
P 		531.3
(3)
P 		366
B 308.3
(-0.6)
P 		210.9
(-2)
P 		146.4
(-3)
P 		545.2
(3)
P 		399
C 333.8
(0.1)
P 		126.3
(-3)
P 		243.6
(-1.3)
P 		528.8
(3)
P 		403
avr 324.2
(-0.4) 		167.6
(-3) 		207
(-2.4) 		535.1
(3) 		368

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 263
1 2 3 4 5 6 range
A 299.1
(-0.5)
P 		237.3
(-3)
P 		356.2
(1.7)
P 		287.8
(-1)
P 		305.9
(-0.3)
P 		388.2
(3)
P 		151
B 330.1
(-1.6)
P 		354.5
(-0.7)
P 		358.8
(-0.5)
P 		298.2
(-2.8)
P 		292.3
(-3)
P 		454.6
(3)
P 		162
C 196.6
(-3)
P 		364.4
(0.8)
P 		279.7
(-1.1)
P 		429.6
(2.3)
P 		229.9
(-2.2)
P 		460
(3)
P 		263
avr 275.3
(-3) 		318.7
(-1.4) 		331.6
(-0.9) 		338.5
(-0.6) 		276
(-3) 		434.3
(3) 		159
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 120.3
(3)
P 		35.9
(-3)
P 		60.4
(-1.3)
P 		77.8
(-0)
P 		84
B 98.3
(1.7)
P 		52.1
(-1.7)
P 		33.9
(-3)
P 		116.2
(3)
P 		82
C 110.5
(3)
P 		36.3
(-3)
P 		84.9
(0.9)
P 		89.2
(1.3)
P 		74
avr 109.7
(3) 		41.4
(-3) 		59.7
(-1.4) 		94.4
(1.7) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 55.1
(-3)
P 		84.4
(1.5)
P 		77.6
(0.4)
P 		73
(-0.3)
P 		92.3
(2.7)
P 		94.5
(3)
P 		39
B 114.9
(-0.6)
P 		118
(-0.4)
P 		87.1
(-2.5)
P 		79
(-3)
P 		118.8
(-0.4)
P 		169.5
(3)
P 		91
C 72.9
(-2.9)
P 		111.2
(-0.1)
P 		71.2
(-3)
P 		86.4
(-1.9)
P 		74.4
(-2.8)
P 		154
(3)
P 		83
avr 81
(-2.8) 		104.5
(-0.4) 		78.6
(-3) 		79.5
(-2.9) 		95.2
(-1.4) 		139.3
(3) 		61
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188602_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.975
Sequence Type Exemplar sequence
Representative Public ID K04G2.3 NCBI
Target Description K04G2.3 /REP_DB=WormBase Gene ID /WP=CE06097 /TR=Q21222 /GB=CAB00040.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=AAA ATPase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059810(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059810 NCBI Caenorhabditis elegans K04G2.3 (K04G2.3) mRNA, complete cds. 11/11 None
SNAP00000009071 ENSEMBL cdna:SNAP chromosome:CEL140:I:8041084:8043822:-1 11/11 None
GENEFINDER00000009090 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8041084:8043822:-1 11/11 None
K04G2.3 ENSEMBL cdna:known chromosome:CEL140:I:8041000:8043822:-1 gene:K04G2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8041014-8043753(-) 100.0 100.0
Public Domain and Genome References
Gene Title AAA ATPase
Ensembl K04G2.3
Entrez Gene 172586 Entrez gene
SwissProt Q21222 EMBL-EBI
WormBase CE06097 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
166 nucleotide binding inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB00040 Hypothetical protein K04G2.3 [Caenorhabditis elegans] ref|NP_492211.1| K04G2.3 [Caenorhabditis elegans] 0.0
blast CAE63701 Hypothetical protein CBG08216 [Caenorhabditis briggsae] 0.0
blast NP_660208 spermatogenesis associated factor SPAF [Homo sapiens] gb|AAM00262.1| spermatogenesis associated factor [Homo sapiens] 2.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 1.6E-91
Sequence
Target Sequence 
>C. ELEGANS:188602_AT
tgaatttcctcgctgtcaagggaccggagcttttcagtaaatgggttggagactctgaaa
aagcaattcgagatttattttcaagagcaagacaagttgctccaactattgtattctttg
atgaaatcgatgcagttggttcttcaagaggttcggaaaaaagttctggagtttcggatc
gagttttggcacaattgctcactgagttagatggtttggaaaagtcaagtagagttatat
tattggcggcaactaatcggcctgatcaattggatagtgcacttttaagacctggtcgcc
tggatcgtgctatttatgtcggattaccatgtgaagtgacacgaagagccattctcgaaa
tgcgaactaaaaaaatgaaattcgatgatacagttagaacaattgataaactagtggaaa
aaacatcaggatattccggtgcagaacttgttgctgtctgtagaactgctgcaatgtttg
caatgcgtgaaagcattgatgctacaatcgtgcaatggacgcattttgaacaagctcttg
ccgcagttgtttcccgaactgaagcgtatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAATTTCCTCGCTGTCAAGGGACC 380 573 1568 Antisense
GTCAAGGGACCGGAGCTTTTCAGTA 312 463 1582 Antisense
AGTTGCTCCAACTATTGTATTCTTT 182 65 1662 Antisense
GAGTTTTGGCACAATTGCTCACTGA 631 397 1748 Antisense
GGCGGCAACTAATCGGCCTGATCAA 458 541 1812 Antisense
AGTGCACTTTTAAGACCTGGTCGCC 375 59 1843 Antisense
GTCGCCTGGATCGTGCTATTTATGT 578 475 1862 Antisense
GTGACACGAAGAGCCATTCTCGAAA 635 481 1903 Antisense
GCTGTCTGTAGAACTGCTGCAATGT 501 295 2020 Antisense
AACAAGCTCTTGCCGCAGTTGTTTC 439 135 2096 Antisense
GTTGTTTCCCGAACTGAAGCGTATC 510 435 2113 Antisense
Sequence Source Affymetrix Proprietary Database