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[188601_at] 7TM chemoreceptor, srg family

Description C18F10.8 /REP_DB=WormBase Gene ID /WP=CE06858 /GEN=srg-7 /TR=SW:P54129 /GB=AAC47059.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 91      6grp_total > 94      4grp_total > 04      6grp_cgc > 88      6grp_high1_sub > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 79.5
(-1)
P 		45.3
(-3)
A 		72.8
(-1.4)
A 		146.5
(3)
P 		101
B 57.7
(-3)
P 		65.8
(-2.1)
A 		73
(-1.3)
A 		110.6
(3)
P 		53
C 78.6
(-0.7)
P 		43.4
(-2.6)
A 		35.7
(-3)
A 		149.1
(3)
P 		113
avr 71.9
(-1.5) 		51.5
(-3) 		60.5
(-2.4) 		135.4
(3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 6.9
(-3)
A 		56
(0.1)
P 		53.3
(-0.1)
P 		36.5
(-1.1)
A 		102.1
(3)
P 		70
(1)
P 		95
B 51
(-2.1)
P 		47.2
(-2.3)
P 		37.8
(-3)
A 		44.2
(-2.5)
P 		121.3
(3)
P 		69.1
(-0.8)
P 		84
C 67.9
(0.9)
P 		64.7
(0.6)
P 		26.1
(-3)
A 		90.7
(3)
P 		59.4
(0.1)
P 		63.7
(0.5)
P 		65
avr 41.9
(-2.7) 		56
(-1.2) 		39.1
(-3) 		57.1
(-1) 		94.3
(3) 		67.6
(0.1) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 28.9
(3)
P 		9.8
(-3)
A 		19
(-0.1)
A 		21.4
(0.6)
P 		19
B 18.4
(-1.3)
P 		16.3
(-3)
A 		16.9
(-2.5)
A 		23.6
(3)
P 		7
C 26
(3)
P 		12.5
(-3)
A 		12.5
(-3)
A 		25.1
(2.6)
P 		14
avr 24.4
(3) 		12.9
(-3) 		16.1
(-1.3) 		23.4
(2.5) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 1.3
(-3)
A 		19.9
(0.8)
P 		11.6
(-0.9)
P 		9.3
(-1.4)
A 		30.8
(3)
P 		17
(0.2)
P 		30
B 17.7
(-1.7)
P 		15.7
(-2)
P 		9.2
(-3)
A 		11.7
(-2.6)
P 		49.3
(3)
P 		25.8
(-0.5)
P 		40
C 25.2
(3)
P 		19.7
(1.2)
P 		6.7
(-3)
A 		18.2
(0.7)
P 		19.2
(1.1)
P 		21.3
(1.7)
P 		19
avr 14.7
(-1.6) 		18.4
(-0.7) 		9.2
(-3) 		13.1
(-2) 		33.1
(3) 		21.4
(0.1) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188601_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7243
Sequence Type Exemplar sequence
Representative Public ID C18F10.8 NCBI
Target Description C18F10.8 /REP_DB=WormBase Gene ID /WP=CE06858 /GEN=srg-7 /TR=SW:P54129 /GB=AAC47059.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065970(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065970 NCBI Caenorhabditis elegans Serpentine Receptor, class G (gamma) family member (srg-7) (srg-7) mRNA, complete cds. 11/11 None
GENEFINDER00000044247 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6266449:6270115:-1 11/11 None
C18F10.8 ENSEMBL cdna:known chromosome:CEL140:III:6266449:6268098:-1 gene:C18F10.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6266447-6268097(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srg family
Gene Symbol srg-7
Ensembl C18F10.8
Entrez Gene 191833 Entrez gene
SwissProt P54129 EMBL-EBI
WormBase CE06858 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC47059 Serpentine receptor, class g (gamma) protein 7 [Caenorhabditis elegans] ref|NP_498371.1| Serpentine Receptor, class G (gamma) family member (srg-7) [Caenorhabditis elegans] sp|P54129|SRG7_CAEEL Serpentine receptor class gamma-7 (Protein srg-7) 1.0E-175
blast 2123261AG chemosensory receptor 1.0E-173
blast AAC47059 Serpentine receptor, class g (gamma) protein 7 [Caenorhabditis elegans] ref|NP_498371.1| Serpentine Receptor, class G (gamma) family member (srg-7) [Caenorhabditis elegans] sp|P54129|SRG7_CAEEL Serpentine receptor class gamma-7 (Protein srg-7) 1.0E-125
blast 2123261AG chemosensory receptor 1.0E-122
blast AAC47055 Serpentine receptor, class g (gamma) protein 3 [Caenorhabditis elegans] ref|NP_498372.1| Serpentine Receptor, class G (gamma) family member (srg-3) [Caenorhabditis elegans] sp|P46572|SRG3_CAEEL Serpentine receptor class gamma-3 (Protein srg-3) 1.0E-112
blast CAE70731 Hypothetical protein CBG17475 [Caenorhabditis briggsae] 8.0E-69
Protein Domains
Database ID Description E-Value
Pfam IPR000609 EMBL-EBI Integral membrane protein Srg, nematode type 1.0E-126
Pfam IPR000609 EMBL-EBI Integral membrane protein Srg, nematode type 1.0E-126
Pfam IPR000609 EMBL-EBI Integral membrane protein Srg, nematode type 4.7E-120
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498371.1 7 30-49,62-84,99-121,152-172,192-214,235-257,272-291
C18F10.8 7 30-49,62-84,99-121,152-172,192-214,235-257,272-291
GENEFINDER00000044247 11 34-56,77-96,116-138,159-181,196-215,279-301,311-333,363-383,403-425,446-468,483-502
Sequence
Target Sequence 
>C. ELEGANS:188601_AT
gttttgtgttcttatcccatttggacatgatgagaagttaagaagacatattccactatt
tttaactatcatctgcatactcccaatccttgtggtttggaatacagtcatttcagaaaa
agaagtggttttttggtatggaggattttttgtcatttatcatagaagagtcggctgggt
cagcctatccaagcttcatttaacttttattttcgtttccatcagctttatcctgatatc
atctctacttctaatgagacatcttccaatagaaagtgctgtaaatgcggagagacgagt
tattacaaattctatattcatcattgttgccttcttttttcaagcagcgttccagagttt
ttatgcgttttttcgatacactgattggtacccaagatttctcgtcgattttcaattcat
tatctacgatgtaatgactgttggctatccact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTTGTGTTCTTATCCCATTTGGA 151 449 417 Antisense
TTAACTATCATCTGCATACTCCCAA 185 685 478 Antisense
GCATACTCCCAATCCTTGTGGTTTG 629 307 491 Antisense
GTCAGCCTATCCAAGCTTCATTTAA 290 465 595 Antisense
TTTATTTTCGTTTCCATCAGCTTTA 273 675 622 Antisense
TATCCTGATATCATCTCTACTTCTA 197 659 645 Antisense
ATATTCATCATTGTTGCCTTCTTTT 518 19 730 Antisense
GCCTTCTTTTTTCAAGCAGCGTTCC 80 281 745 Antisense
CAGCGTTCCAGAGTTTTTATGCGTT 411 203 761 Antisense
TGGTACCCAAGATTTCTCGTCGATT 397 551 802 Antisense
ATGTAATGACTGTTGGCTATCCACT 271 47 845 Antisense
Sequence Source Affymetrix Proprietary Database