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[188598_at] chitinase

Description R09D1.11 /REP_DB=WormBase Gene ID /WP=CE06282 /TR=Q21870 /GB=CAA93874.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=chitinase
Cluster 6grp_total > 62      4grp_total > 53      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 148
1 2 3 4 range
A 124.3
(3)
P 		80.7
(0.3)
M 		65.4
(-0.6)
A 		26.1
(-3)
A 		98
B 121.5
(2.4)
P 		130.3
(3)
A 		69.1
(-1.2)
A 		42.8
(-3)
A 		88
C 174.2
(3)
P 		77.6
(-1.7)
A 		77.9
(-1.7)
P 		51.4
(-3)
A 		123
avr 140
(3) 		96.2
(0.4) 		70.8
(-1.2) 		40.1
(-3) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 241
1 2 3 4 5 6 range
A 60.7
(-2)
A 		99.3
(-1.1)
P 		263
(3)
P 		251.8
(2.7)
P 		127.6
(-0.4)
P 		22.5
(-3)
A 		241
B 72.9
(-2)
M 		203.5
(3)
P 		186.5
(2.4)
P 		145.4
(0.8)
P 		135.5
(0.4)
P 		45.6
(-3)
A 		158
C 75.9
(-1.7)
A 		120.6
(-0.3)
P 		145.5
(0.5)
P 		225.2
(3)
P 		117.7
(-0.4)
P 		34.8
(-3)
A 		190
avr 69.8
(-1.8) 		141.1
(0.7) 		198.3
(2.7) 		207.5
(3) 		126.9
(0.2) 		34.3
(-3) 		173
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 45.3
(3)
P 		17.5
(-1)
M 		17.1
(-1.1)
A 		3.8
(-3)
A 		42
B 38.8
(3)
P 		32.2
(1.7)
A 		16
(-1.6)
A 		9.1
(-3)
A 		30
C 57.7
(3)
P 		22.3
(-1.3)
A 		27.1
(-0.7)
P 		8.7
(-3)
A 		49
avr 47.3
(3) 		24
(-0.5) 		20.1
(-1.1) 		7.2
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 11.2
(-2.4)
A 		35.3
(0.1)
P 		57.3
(2.3)
P 		63.9
(3)
P 		38.5
(0.4)
P 		5.5
(-3)
A 		58
B 25.4
(-2)
M 		67.7
(3)
P 		45.3
(0.3)
P 		38.5
(-0.5)
P 		55
(1.5)
P 		17
(-3)
A 		51
C 28.1
(-0.1)
A 		36.8
(1.5)
P 		37
(1.5)
P 		45.3
(3)
P 		38.1
(1.7)
P 		11.6
(-3)
A 		34
avr 21.6
(-1.4) 		46.6
(2.6) 		46.5
(2.6) 		49.2
(3) 		43.9
(2.2) 		11.4
(-3) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188598_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2935
Sequence Type Exemplar sequence
Representative Public ID R09D1.11 NCBI
Target Description R09D1.11 /REP_DB=WormBase Gene ID /WP=CE06282 /TR=Q21870 /GB=CAA93874.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=chitinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063631(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063631 NCBI Caenorhabditis elegans R09D1.11 (chitinase) mRNA, complete cds. 11/11 None
R09D1.11 ENSEMBL cdna:known chromosome:CEL140:II:9466869:9468381:-1 gene:R09D1.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9466865-9468378(-) 100.0 100.0
Public Domain and Genome References
Gene Title chitinase
Ensembl R09D1.11
Entrez Gene 187739 Entrez gene
SwissProt Q21870 EMBL-EBI
WormBase CE06282 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93874 Hypothetical protein R09D1.11 [Caenorhabditis elegans] emb|CAA87667.1| Hypothetical protein R09D1.11 [Caenorhabditis elegans] ref|NP_496032.1| R09D1.11 [Caenorhabditis elegans] 0.0
blast CAA93869 Hypothetical protein R09D1.9 [Caenorhabditis elegans] ref|NP_496030.1| R09D1.9 [Caenorhabditis elegans] 1.0E-109
blast CAA93870 Hypothetical protein R09D1.10 [Caenorhabditis elegans] ref|NP_496031.2| R09D1.10 [Caenorhabditis elegans] 1.0E-100
Protein Domains
Database ID Description E-Value
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 1.9E-96
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496032.1 1 36-58
R09D1.11 1 36-58
Sequence
Target Sequence 
>C. ELEGANS:188598_AT
aatgcttactcaacagactactatactccattagctgataacttgtcagatgacattgct
ggtccttcagcaccaatttattttggagcacagggaaaaagtgaacggaatgttcatcac
actgcaagaaattactcatgtctaacgaagcaagctagtaaattcaacattgtaattcca
ttctacgcaacactatgggagaatgtttatgaaactgttctcgattctaaacgaggtgtc
tatagacatgttgcaccattttatggaagaactgttggaaaaacttatttgtctcgattg
gctgtaaaacaagaaggttttcaagtagaatcatattcgtatgatcctgcaccaagagct
gcattctcatataatagaacaataggaatatatctaacatttgaaacaaaagagagcatc
agagcaaaaattgattatgtgaaggatcggattctgggtggagta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGCTTACTCAACAGACTACTATA 527 165 739 Antisense
GACTACTATACTCCATTAGCTGATA 627 373 754 Antisense
GTCAGATGACATTGCTGGTCCTTCA 13 465 783 Antisense
GGTCCTTCAGCACCAATTTATTTTG 526 501 799 Antisense
GAACGGAATGTTCATCACACTGCAA 570 347 841 Antisense
TACTCATGTCTAACGAAGCAAGCTA 392 563 871 Antisense
TGTAATTCCATTCTACGCAACACTA 564 559 909 Antisense
TGAAACTGTTCTCGATTCTAAACGA 287 573 948 Antisense
TAGACATGTTGCACCATTTTATGGA 322 653 981 Antisense
CATATTCGTATGATCCTGCACCAAG 191 215 1070 Antisense
GAAGGATCGGATTCTGGGTGGAGTA 292 335 1179 Antisense
Sequence Source Affymetrix Proprietary Database