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[188593_at]

Description F58A4.11 /REP_DB=WormBase Gene ID /WP=CE00217 /GEN=gei-13 /TR=SW:P34478 /GB=CAA80171.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 25      4grp_highest_8_8 > 10      4grp_high_8_8 > 54      6grp_highest_nonorm > 70      6grp_total > 15      4grp_total > 57      6grp_highest_sub > 02      6grp_cgc > 23      6grp_high1_sub > 01_02      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 582
1 2 3 4 range
A 248.9
(-2.1)
P
503.5
(1)
P
662
(3)
P
175.6
(-3)
P
486
B 231.2
(-0.9)
P
512.6
(3)
P
410.4
(1.6)
P
80.4
(-3)
P
432
C 164.7
(-2)
P
538.3
(2.5)
P
575.2
(3)
P
86.5
(-3)
P
489
avr 214.9
(-1.6)
518.1
(2.6)
549.2
(3)
114.2
(-3)
435

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 454
1 2 3 4 5 6 range
A 438.1
(2)
P
489.4
(3)
P
200.6
(-2.4)
P
222.7
(-1.9)
P
165.7
(-3)
P
207.8
(-2.2)
P
324
B 367.2
(0.6)
P
503
(3)
P
215.8
(-2.1)
P
234.8
(-1.8)
P
193
(-2.5)
P
167.5
(-3)
P
336
C 592.7
(3)
P
469.7
(1.4)
P
323.8
(-0.6)
P
233.1
(-1.8)
P
234.3
(-1.7)
P
138.5
(-3)
P
454
avr 466
(2.6)
487.4
(3)
246.7
(-1.6)
230.2
(-1.9)
197.7
(-2.5)
171.3
(-3)
316
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 186
1 2 3 4 range
A 90.6
(-0.4)
P
109.3
(0.4)
P
173.1
(3)
P
25.7
(-3)
P
147
B 73.7
(0.1)
P
126.6
(3)
P
95.1
(1.3)
P
17.1
(-3)
P
110
C 54.5
(-1.7)
P
154.8
(1.5)
P
200.5
(3)
P
14.6
(-3)
P
186
avr 72.9
(-0.6)
130.2
(1.9)
156.2
(3)
19.1
(-3)
137

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 176
1 2 3 4 5 6 range
A 80.8
(-1.3)
P
174
(3)
P
43.7
(-3)
P
56.5
(-2.4)
P
50
(-2.7)
P
50.6
(-2.7)
P
130
B 127.8
(0.9)
P
167.4
(3)
P
52.4
(-3)
P
62.2
(-2.5)
P
78.4
(-1.6)
P
62.4
(-2.5)
P
115
C 219.7
(3)
P
143.3
(0.4)
P
82.4
(-1.8)
P
46.9
(-3)
P
75.8
(-2)
P
46.4
(-3)
P
173
avr 142.8
(2)
161.6
(3)
59.5
(-2.6)
55.2
(-2.9)
68.1
(-2.2)
53.1
(-3)
109
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188593_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7753
Sequence Type Exemplar sequence
Representative Public ID F58A4.11 NCBI
Target Description F58A4.11 /REP_DB=WormBase Gene ID /WP=CE00217 /GEN=gei-13 /TR=SW:P34478 /GB=CAA80171.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066733(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_066733 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-13) (gei-13) mRNA, complete cds. 11/11 None
F58A4.11 ENSEMBL cdna:known chromosome:CEL140:III:9632084:9637161:-1 gene:F58A4.11 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9632747-9637157(-) 97.19 100.0
Public Domain and Genome References
Gene Title
Gene Symbol gei-13
Ensembl F58A4.11
Entrez Gene 176364 Entrez gene
SwissProt P34478 EMBL-EBI
WormBase CE00217 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA80171 Hypothetical protein F58A4.11 [Caenorhabditis elegans] emb|CAA80127.1| Hypothetical protein F58A4.11 [Caenorhabditis elegans] ref|NP_499134.1| GEX Interacting protein family member (gei-13) [Caenorhabditis elegans] sp|P34478|YMHA_CAEEL Hypothetical protein F58A4.11 in chromosome III 0.0
blast S40983 hypothetical protein F58A4.11 - Caenorhabditis elegans (fragment) 0.0
blast S40750 hypothetical protein C15H7.1 - Caenorhabditis elegans 1.0E-148
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499134.1 1 26-48
F58A4.11 1 26-48
Sequence
Target Sequence
>C. ELEGANS:188593_AT
ttcaagtttcccatcaacaccgaaaacacctcaattagtacaacaaattattagtcaatc
attcgcaagatctcaatcaccaaatgttattcaaaatggagaaatcaagattaagaaaga
gtgtgaggatgatatgttcagtggtctctcatccactgacaaacttgctgctcttgttgg
aattgctggacaagaagtgaagaaggaggaagctatgccagcaaactttgaagagttccg
ccaacgccttcttgcaaacagctcgctctcaagtttcctaggacagtctactgctcagcc
aattgctgttgatctaaacggaagtgttattgcttctgaaactaagtcaccgtgctcttc
aaatgaagatgatcggaagcaagaaagagataaagctttggcaagactctgggcagacaa
cgaaactcttctcacaaatactcacttccgcgagtttgtacattgccttgctccagaata
cgagatccc


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
TTCAAGTTTCCCATCAACACCGAAA 175 683 1725 Antisense
GTGGTCTCTCATCCACTGACAAACT 288 489 1865 Antisense
TTCTTGCAAACAGCTCGCTCTCAAG 52 691 1973 Antisense
TCGCTCTCAAGTTTCCTAGGACAGT 255 599 1987 Antisense
CAGTCTACTGCTCAGCCAATTGCTG 272 207 2008 Antisense
GAAACTAAGTCACCGTGCTCTTCAA 477 357 2062 Antisense
AGCTTTGGCAAGACTCTGGGCAGAC 438 79 2118 Antisense
GGCAGACAACGAAACTCTTCTCACA 701 535 2136 Antisense
TCTCACAAATACTCACTTCCGCGAG 709 611 2154 Antisense
TTCCGCGAGTTTGTACATTGCCTTG 296 697 2170 Antisense
GCCTTGCTCCAGAATACGAGATCCC 609 281 2189 Antisense
Sequence Source Affymetrix Proprietary Database