[Home] | [Total List]

[188592_at] histone H3

Description E03A3.4 /REP_DB=WormBase Gene ID /WP=CE00943 /TR=Q27490 /GB=CAA86229.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=histone H3
Cluster 6grp_total > 98      4grp_total > 07      6grp_cgc > 79      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 37.2
(2.1)
A 		7.6
(-3)
A 		42.3
(3)
A 		38.2
(2.3)
A 		35
B 7.5
(-3)
A 		14.4
(-1.9)
A 		13.4
(-2)
A 		43.9
(3)
A 		36
C 49.1
(3)
A 		9.5
(-2.4)
A 		5.1
(-3)
A 		10
(-2.3)
A 		44
avr 31.3
(3) 		10.5
(-3) 		20.3
(-0.2) 		30.7
(2.8) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 7.9
(-2.8)
A 		6.8
(-2.9)
A 		4.7
(-3)
A 		41.8
(-1.2)
A 		75.6
(0.4)
A 		130.8
(3)
P 		126
B 5.3
(-3)
A 		36
(-1.3)
A 		61.1
(0)
A 		19.3
(-2.2)
A 		115.1
(3)
P 		83.9
(1.3)
P 		110
C 9.6
(-3)
A 		54.5
(-1.2)
A 		12.3
(-2.9)
A 		29.7
(-2.2)
A 		120.9
(1.4)
A 		160.8
(3)
P 		151
avr 7.6
(-3) 		32.4
(-1.7) 		26
(-2.1) 		30.3
(-1.8) 		103.9
(1.9) 		125.2
(3) 		118
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 13.5
(3)
A 		1.6
(-3)
A 		11
(1.7)
A 		5.6
(-1)
A 		12
B 2.4
(-3)
A 		3.5
(-2)
A 		3.1
(-2.4)
A 		9.3
(3)
A 		7
C 16.3
(3)
A 		2.7
(-2.6)
A 		1.8
(-3)
A 		1.7
(-3)
A 		15
avr 10.7
(3) 		2.6
(-3) 		5.3
(-1) 		5.5
(-0.9) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 1.5
(-2.9)
A 		2.4
(-2.7)
A 		1
(-3)
A 		10.6
(-1.1)
A 		22.8
(1.2)
A 		31.9
(3)
P 		31
B 1.9
(-3)
A 		12
(-1.6)
A 		14.8
(-1.3)
A 		5.1
(-2.6)
A 		46.7
(3)
P 		31.3
(0.9)
P 		45
C 3.6
(-2.9)
A 		16.6
(-1.4)
A 		3.1
(-3)
A 		6
(-2.7)
A 		39.1
(1.3)
A 		53.8
(3)
P 		51
avr 2.3
(-3) 		10.3
(-1.7) 		6.3
(-2.3) 		7.2
(-2.2) 		36.2
(2.5) 		39
(3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188592_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7782
Sequence Type Exemplar sequence
Representative Public ID E03A3.4 NCBI
Target Description E03A3.4 /REP_DB=WormBase Gene ID /WP=CE00943 /TR=Q27490 /GB=CAA86229.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=histone H3
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065411(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065411 NCBI Caenorhabditis elegans HIStone family member (his-70) (his-70) mRNA, complete cds. 11/11 None
GENEFINDER00000016650 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4059068:4060090:-1 11/11 None
SNAP00000016641 ENSEMBL cdna:SNAP chromosome:CEL140:III:4059710:4060090:-1 11/11 None
E03A3.4 ENSEMBL cdna:known chromosome:CEL140:III:4059710:4060090:-1 gene:E03A3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4059709-4060090(-) 100.0 100.0
Public Domain and Genome References
Gene Title histone H3
Gene Symbol his-70
Ensembl E03A3.4
Entrez Gene 184006 Entrez gene
SwissProt Q27490 EMBL-EBI
WormBase CE00943 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6334 nucleosome assembly inferred from electronic annotation QuickGO AmiGO
7001 chromosome organization and biogenesis (sensu Eukaryota) inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
786 nucleosome inferred from electronic annotation QuickGO AmiGO
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA86229 Hypothetical protein E03A3.4 [Caenorhabditis elegans] ref|NP_497812.1| HIStone family member (his-70) [Caenorhabditis elegans] 7.0E-58
blast CAA86229 Hypothetical protein E03A3.4 [Caenorhabditis elegans] ref|NP_497812.1| HIStone family member (his-70) [Caenorhabditis elegans] 7.0E-57
blast AAB27669 H3 histone [Styela plicata] 4.0E-43
blast CAB11546 Hypothetical protein Y49E10.6 [Caenorhabditis elegans] ref|NP_499608.1| HIStone family member (his-72) [Caenorhabditis elegans] emb|CAE66490.1| Hypothetical protein CBG11770 [Caenorhabditis briggsae] 5.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR007125 EMBL-EBI Histone core 1.8E-16
Pfam IPR007125 EMBL-EBI Histone core 4.4E-17
Sequence
Target Sequence 
>C. ELEGANS:188592_AT
caagcacactgctcgcaagtcgtttggaggaaaagctccgagaaagtcattggcgacgaa
ggctgctcgtaaggttttccccgtcgacggacaagtcaagaagcgctatcggccaagttc
caatgcactcaaggaaattcgaaaatatcaaaaatccacggagctgctggtccgcaagtt
gccattccaacgtctcgttcgtgaagtcgctcaagaaatcatgccgaacgttcgattcca
atctgctgccattcaggctcttcatgaagctgctgaagcttatctcatcggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGCACACTGCTCGCAAGTCGTTT 412 185 24 Antisense
AAGCTCCGAGAAAGTCATTGGCGAC 677 149 56 Antisense
CATTGGCGACGAAGGCTGCTCGTAA 253 213 71 Antisense
TTTCCCCGTCGACGGACAAGTCAAG 27 661 99 Antisense
CGCTATCGGCCAAGTTCCAATGCAC 13 255 127 Antisense
CAAAAATCCACGGAGCTGCTGGTCC 298 191 172 Antisense
CTCGTTCGTGAAGTCGCTCAAGAAA 140 233 217 Antisense
CATGCCGAACGTTCGATTCCAATCT 160 211 243 Antisense
TTCCAATCTGCTGCCATTCAGGCTC 588 701 259 Antisense
TTCAGGCTCTTCATGAAGCTGCTGA 373 685 275 Antisense
GCTGCTGAAGCTTATCTCATCGGAC 591 297 292 Antisense
Sequence Source Affymetrix Proprietary Database