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[188590_s_at] Ank repeat

Description T12D8.3 /REP_DB=WormBase Gene ID /WP=CE16400 /TR=Q9XVJ0 /GB=CAB03343.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Ank repeat
Cluster 6grp_total > 87      4grp_total > 55      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 82.7
(3)
A 		66.4
(0.2)
A 		80.3
(2.6)
A 		47.8
(-3)
A 		35
B 131.3
(3)
A 		92.2
(-1.6)
A 		106.4
(0)
A 		80.8
(-3)
A 		51
C 136.7
(3)
P 		65
(-3)
A 		76.8
(-2)
A 		97.8
(-0.3)
A 		72
avr 116.9
(3) 		74.5
(-3) 		87.8
(-1.1) 		75.5
(-2.9) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 160
1 2 3 4 5 6 range
A 23.2
(-3)
A 		83
(-0.1)
M 		114.7
(1.5)
P 		68.8
(-0.8)
A 		68.5
(-0.8)
P 		145.3
(3)
P 		122
B 88.9
(-1)
A 		49.9
(-3)
A 		71.8
(-1.9)
A 		72.4
(-1.9)
M 		148.6
(2)
P 		168.2
(3)
P 		118
C 101.2
(-1.2)
A 		89.8
(-1.8)
A 		67.3
(-3)
A 		103.5
(-1.1)
A 		129.1
(0.2)
P 		182.7
(3)
P 		115
avr 71.1
(-3) 		74.2
(-2.8) 		84.6
(-2.1) 		81.6
(-2.3) 		115.4
(-0.2) 		165.4
(3) 		94
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 30.1
(3)
A 		14.4
(-1.1)
A 		21
(0.6)
A 		7
(-3)
A 		23
B 41.9
(3)
A 		22.8
(-1.6)
A 		24.6
(-1.2)
A 		17.2
(-3)
A 		25
C 45.2
(3)
P 		18.7
(-2.5)
A 		26.8
(-0.8)
A 		16.5
(-3)
A 		29
avr 39.1
(3) 		18.6
(-1.8) 		24.1
(-0.5) 		13.6
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 4.3
(-3)
A 		29.5
(1.9)
M 		25
(1)
P 		17.4
(-0.5)
A 		20.7
(0.2)
P 		35.4
(3)
P 		31
B 30.9
(-1.1)
A 		16.6
(-3)
A 		17.4
(-2.9)
A 		19.2
(-2.7)
M 		60.4
(2.7)
P 		62.7
(3)
P 		46
C 37.5
(-0.2)
A 		27.4
(-1.6)
A 		17.1
(-3)
A 		20.8
(-2.5)
A 		41.8
(0.4)
P 		61.2
(3)
P 		44
avr 24.2
(-2.1) 		24.5
(-2) 		19.8
(-2.9) 		19.1
(-3) 		41
(0.9) 		53.1
(3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188590_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6605
Sequence Type Exemplar sequence
Representative Public ID T12D8.3 NCBI
Target Description T12D8.3 /REP_DB=WormBase Gene ID /WP=CE16400 /TR=Q9XVJ0 /GB=CAB03343.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Ank repeat
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067416(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067416 NCBI Caenorhabditis elegans T12D8.3 (T12D8.3) mRNA, complete cds. 10/11 None
GENEFINDER00000041279 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13639737:13641204:-1 11/11 None
T12D8.3 ENSEMBL cdna:known chromosome:CEL140:III:13639472:13641204:-1 gene:T12D8.3 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041267 5/11 Cross Hyb Matching Probes None
SNAP00000041268 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13639732-13641839(-) 100.0 100.0
Public Domain and Genome References
Gene Title Ank repeat
Ensembl T12D8.3
Entrez Gene 176800 Entrez gene
SwissProt Q9XVJ0 EMBL-EBI
WormBase CE37145 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:248269_AT acyl-CoA binding protein, putative / ACBP, putative at
CANINE:1586253_AT similar to acyl-Coenzyme A binding domain containing 6 cfa
CANINE_2:CFA.5146.1.A1_S_AT similar to acyl-Coenzyme A binding domain containing 6 cfa
CHICKEN:GGAAFFX.2445.1.S1_AT similar to acyl-Coenzyme A binding domain containing 6 gga
CHICKEN:GGAAFFX.2449.1.S1_AT similar to acyl-Coenzyme A binding domain containing 6 gga
HU35KSUBA:T94828_AT acyl-Coenzyme A binding domain containing 6 hs
HU35KSUBB:RC_AA085012_AT acyl-Coenzyme A binding domain containing 6 hs
U133_X3P:HS.63220.0.A1_3P_AT acyl-Coenzyme A binding domain containing 6 hs
HG-U133_PLUS_2:225317_AT acyl-Coenzyme A binding domain containing 6 hs
HG-U133B:225317_AT acyl-Coenzyme A binding domain containing 6 hs
HG-U95B:53977_AT acyl-Coenzyme A binding domain containing 6 hs
HG-U95C:66306_AT Acyl-Coenzyme A binding domain containing 6 hs
HG-U95D:73917_AT Acyl-Coenzyme A binding domain containing 6 hs
HG-U95D:84457_AT Acyl-Coenzyme A binding domain containing 6 hs
MG-U74AV2:104346_AT acyl-Coenzyme A binding domain containing 6 mm
MOUSE430_2:1452601_A_AT acyl-Coenzyme A binding domain containing 6 mm
MOUSE430A_2:1452601_A_AT acyl-Coenzyme A binding domain containing 6 mm
MOE430A:1452601_A_AT acyl-Coenzyme A binding domain containing 6 mm
MOE430A:1453199_AT acyl-Coenzyme A binding domain containing 6 mm
MOUSE430A_2:1453199_AT acyl-Coenzyme A binding domain containing 6 mm
MOUSE430_2:1453199_AT acyl-Coenzyme A binding domain containing 6 mm
MU19KSUBA:TC18514_AT Acyl-Coenzyme A binding domain containing 6 (Acbd6), mRNA mm
MU19KSUBA:TC18514_G_AT Acyl-Coenzyme A binding domain containing 6 (Acbd6), mRNA mm
MU11KSUBB:W30185_S_AT Acyl-Coenzyme A binding domain containing 6 (Acbd6), mRNA mm
RAE230A:1374555_AT acyl-Coenzyme A binding domain containing 6 (predicted) rn
RAT230_2:1374555_AT acyl-Coenzyme A binding domain containing 6 (predicted) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
62 acyl-CoA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03343 Hypothetical protein T12D8.3 [Caenorhabditis elegans] ref|NP_499817.2| T12D8.3 [Caenorhabditis elegans] 1.0E-158
blast CAB03343 Hypothetical protein T12D8.3 [Caenorhabditis elegans] ref|NP_499817.2| T12D8.3 [Caenorhabditis elegans] 1.0E-156
blast CAE71345 Hypothetical protein CBG18247 [Caenorhabditis briggsae] 7.0E-91
blast CAE71345 Hypothetical protein CBG18247 [Caenorhabditis briggsae] 2.0E-88
blast XP_422259 PREDICTED: similar to acyl-Coenzyme A binding domain containing 6 [Gallus gallus] 2.0E-24
blast XP_422259 PREDICTED: similar to acyl-Coenzyme A binding domain containing 6 [Gallus gallus] 4.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR000582 EMBL-EBI Acyl-coA-binding protein, ACBP 2.4E-10
Pfam IPR002110 EMBL-EBI Ankyrin 0.0013
Pfam IPR002110 EMBL-EBI Ankyrin 1.7E-6
Pfam IPR002110 EMBL-EBI Ankyrin 0.32
Sequence
Target Sequence 
>C. ELEGANS:188590_S_AT
cctactggttcgaaacggtcgcgcgcaaaaagttcaactcgtggctagcgaatagtcaga
tgagccggtcgagagctatggaagcgtattgtgagctcatggctcagcttgacacgtctt
gggatccggatgcagagacggtgaagaaaagtggactgtgggagaagatgcccagcacaa
tgggtgttatcgagccagaaatgttcgacgacgctgtggtgcacccgccaacgaaactgg
aaaccgaaaccgaaaagaaatggttcgcggcgatgcgcgtgagcgatatcgacactatgc
gcacacttttgagaaatgaacccgagattattgaggccaaggatcaatatttggcgatga
ccgctctcctatgggctacggacctcggatgtgatccagttgttcaatttcttattgaaa
acaatgtagatgtcaatgcagtcgatggatgtctacagacagcgctacattttgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTACTGGTTCGAAACGGTCGCGCG 661 263 515 Antisense
CGGTCGCGCGCAAAAAGTTCAACTC 111 243 530 Antisense
GAAGCGTATTGTGAGCTCATGGCTC 296 341 595 Antisense
TGACACGTCTTGGGATCCGGATGCA 263 569 624 Antisense
AAATGTTCGACGACGCTGTGGTGCA 661 119 713 Antisense
TGCACCCGCCAACGAAACTGGAAAC 216 577 734 Antisense
GAAATGGTTCGCGGCGATGCGCGTG 625 361 771 Antisense
TGAGCGATATCGACACTATGCGCAC 524 569 794 Antisense
AATATTTGGCGATGACCGCTCTCCT 513 173 860 Antisense
GCTACGGACCTCGGATGTGATCCAG 421 303 889 Antisense
GTCTACAGACAGCGCTACATTTTGG 144 469 965 Antisense
Sequence Source Affymetrix Proprietary Database