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[188587_s_at] catalase /// catalase

Description Y54G11A.6 /REP_DB=WormBase Gene ID /WP=CE22478 /TR=Q9XVZ4 /GB=CAA22458.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Catalase
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 78      4grp_highest_8_8 > 22      4grp_high_8_8 > 07      6grp_highest_nonorm > 49      6grp_total > 69      4grp_total > 01      6grp_highest_sub > Cu      6grp_cgc > 39      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7112
1 2 3 4 range
A 2949.3
(-2.6)
P 		2547.3
(-3)
P 		3394.9
(-2.1)
P 		8475.7
(3)
P 		5928
B 3070.5
(-2.2)
P 		2281.9
(-3)
P 		3146.8
(-2.2)
P 		8457.3
(3)
P 		6175
C 2533.3
(-2.4)
P 		1793.5
(-3)
P 		3407.5
(-1.6)
P 		8905.6
(3)
P 		7112
avr 2851
(-2.4) 		2207.6
(-3) 		3316.4
(-2) 		8612.9
(3) 		6405

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4805
1 2 3 4 5 6 range
A 5293.2
(-0.1)
P 		2962.7
(-3)
P 		3053.1
(-2.9)
P 		3437.1
(-2.4)
P 		4516.2
(-1.1)
P 		7767.6
(3)
P 		4805
B 4941.7
(-0.6)
P 		3071.4
(-3)
P 		3343.4
(-2.6)
P 		3534
(-2.4)
P 		4773.6
(-0.8)
P 		7711.1
(3)
P 		4640
C 4619.2
(-0.4)
P 		3169.5
(-2.8)
P 		3434.8
(-2.4)
P 		3065.6
(-3)
P 		5043.2
(0.3)
P 		6690.3
(3)
P 		3625
avr 4951.4
(-0.4) 		3067.9
(-3) 		3277.1
(-2.7) 		3345.6
(-2.6) 		4777.7
(-0.6) 		7389.7
(3) 		4322
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1287
1 2 3 4 range
A 1073.8
(1.5)
P 		553
(-3)
P 		887.5
(-0.1)
P 		1240.7
(3)
P 		688
B 979.2
(-1)
P 		563.6
(-3)
P 		729.2
(-2.2)
P 		1802.2
(3)
P 		1239
C 838.6
(-1)
P 		515.7
(-3)
P 		1187.6
(1.1)
P 		1501.6
(3)
P 		986
avr 963.9
(-0.4) 		544.1
(-3) 		934.8
(-0.6) 		1514.8
(3) 		971

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2259
1 2 3 4 5 6 range
A 975.8
(-1.5)
P 		1053.7
(-1.1)
P 		664.9
(-3)
P 		871.7
(-2)
P 		1362.8
(0.4)
P 		1891.2
(3)
P 		1226
B 1719.5
(-0.4)
P 		1022.3
(-2.4)
P 		811.9
(-3)
P 		936
(-2.6)
P 		1939.4
(0.3)
P 		2875.4
(3)
P 		2064
C 1712.1
(1.1)
P 		967.1
(-1.7)
P 		874.2
(-2)
P 		616.5
(-3)
P 		1631.9
(0.8)
P 		2239.6
(3)
P 		1623
avr 1469.1
(-0.3) 		1014.4
(-2.1) 		783.7
(-3) 		808.1
(-2.9) 		1644.7
(0.3) 		2335.4
(3) 		1552
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188587_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3130
Sequence Type Exemplar sequence
Representative Public ID Y54G11A.6 NCBI
Target Description Y54G11A.6 /REP_DB=WormBase Gene ID /WP=CE22478 /TR=Q9XVZ4 /GB=CAA22458.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Catalase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171051(11), NM_064578(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171051 NCBI Caenorhabditis elegans Y54G11A.13 (catalase) mRNA, complete cds. 11/11 A 
NM_064578 NCBI Caenorhabditis elegans Y54G11A.6 (catalase) mRNA, complete cds. 11/11 A 
SNAP00000023651 ENSEMBL cdna:SNAP chromosome:CEL140:II:14303511:14306143:-1 10/11 None
SNAP00000023653 ENSEMBL cdna:SNAP chromosome:CEL140:II:14307744:14310169:-1 10/11 None
GENEFINDER00000023684 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14303511:14306143:-1 11/11 None
GENEFINDER00000023691 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14307744:14310633:-1 11/11 None
Y54G11A.6 ENSEMBL cdna:known chromosome:CEL140:II:14303450:14306183:-1 gene:Y54G11A.6 11/11 A 
Y54G11A.13 ENSEMBL cdna:known chromosome:CEL140:II:14307744:14310669:-1 gene:Y54G11A.13 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14307740-14310630(-) 100.0 100.0
chrII:14303507-14305990(-) 90.84 90.84
Public Domain and Genome References
Gene Title catalase
catalase
Gene Symbol ctl-3
ctl-1
Ensembl Y54G11A.6
Y54G11A.13
Entrez Gene 175086 Entrez gene
259738 Entrez gene
SwissProt Q8MYL7 EMBL-EBI
O61235 EMBL-EBI
WormBase CE22478 Wormbase
CE30713 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:253174_AT catalase 2 at
ATGENOME1:16905_S_AT catalase 2 at
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
6979 response to oxidative stress inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4096 catalase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAD31698 Hypothetical protein Y54G11A.13 [Caenorhabditis elegans] ref|NP_741058.1| Y54G11A.13 [Caenorhabditis elegans] 0.0
blast CAA22458 Hypothetical protein Y54G11A.6 [Caenorhabditis elegans] ref|NP_496979.2| Y54G11A.6 [Caenorhabditis elegans] sp|O61235|CATA2_CAEEL Catalase-2 0.0
blast CAA74394 catalase 2 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002226 EMBL-EBI Catalase 1.0E-126
Pfam IPR002226 EMBL-EBI Catalase 1.0E-126
Pfam IPR002226 EMBL-EBI Catalase 1.0E-126
Pfam IPR002226 EMBL-EBI Catalase 1.0E-126
Pfam IPR002226 EMBL-EBI Catalase 1.0E-126
Pfam IPR002226 EMBL-EBI Catalase 5.3E-48
Pfam IPR002226 EMBL-EBI Catalase 1.0E-126
Pfam IPR002226 EMBL-EBI Catalase 5.3E-48
Sequence
Target Sequence 
>C. ELEGANS:188587_S_AT
tttcgctgaggtcgaacaagccgccttctgcccggcccacatcgtcccaggaatcgagtt
ctcgccagacaagatgctccaagggcgtatcttctcctacacggacacgcattaccatcg
ccttggaccaaactacattcagcttccagtcaactgcccgtaccgctcccgtgctcatac
cactcaacgcgatggtgcaatggcttatgaaagccagggagatgcgccgaattacttccc
gaacagtttccgcggataccgtactcgtgatgatgtgaaggagtcgacatttcagacgac
tggagatgttgatcgttatgagactggagacgatcacaactacgagcagccacgtcagtt
ctgggagaaagtgctcaaggaggaggagagagatcggctcgttgggaatttggctagtga
tttgggtggctgtttggaggaaattcaaaatggaatggtcaaagagttcacgaaagttca
tccggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCGCTGAGGTCGAACAAGCCGCC 660 613 1020 Antisense
TGCTCATACCACTCAACGCGATGGT 105 581 1191 Antisense
GAAAGCCAGGGAGATGCGCCGAATT 46 359 1228 Antisense
GGGAGATGCGCCGAATTACTTCCCG 262 495 1236 Antisense
TACTTCCCGAACAGTTTCCGCGGAT 171 645 1252 Antisense
TTCCGCGGATACCGTACTCGTGATG 483 695 1267 Antisense
GAGACGATCACAACTACGAGCAGCC 683 393 1346 Antisense
GCAGCCACGTCAGTTCTGGGAGAAA 355 315 1365 Antisense
AGAGATCGGCTCGTTGGGAATTTGG 395 69 1408 Antisense
GGCTAGTGATTTGGGTGGCTGTTTG 550 537 1431 Antisense
AGAGTTCACGAAAGTTCATCCGGAT 313 67 1482 Antisense
Sequence Source Affymetrix Proprietary Database