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[188586_s_at] zinc finger protein

Description Y46H3D.5 /REP_DB=WormBase Gene ID /WP=CE27476 /GB=AAK72308.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_high1_10_10 > 32      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_total > 32      4grp_total > 03      6grp_cgc > 61      6grp_high1_sub > 02_03      6grp_cgc_sub > De      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 171
1 2 3 4 range
A 109.4
(-2.2)
P 		126
(-1.6)
P 		89.8
(-3)
P 		244.8
(3)
P 		155
B 107.3
(-3)
P 		115.8
(-2.6)
P 		111.9
(-2.8)
P 		252.1
(3)
P 		145
C 131.8
(-2)
P 		107
(-3)
P 		108.3
(-2.9)
P 		260.4
(3)
P 		153
avr 116.2
(-2.5) 		116.3
(-2.5) 		103.3
(-3) 		252.4
(3) 		149

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 114.7
(-0.2)
P 		144.2
(1.5)
P 		169
(3)
P 		131.8
(0.8)
P 		97.5
(-1.2)
P 		66.5
(-3)
A 		103
B 123.8
(0.7)
P 		105.7
(-2.8)
P 		113.2
(-1.4)
P 		135.6
(3)
P 		116.7
(-0.7)
P 		104.8
(-3)
P 		31
C 132.3
(1.6)
P 		145.6
(2.6)
P 		150.1
(2.9)
P 		94.4
(-1.1)
P 		151.9
(3)
P 		67.9
(-3)
P 		84
avr 123.6
(1.1) 		131.8
(1.9) 		144.1
(3) 		120.6
(0.8) 		122
(0.9) 		79.7
(-3) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 39.8
(3)
P 		27.3
(-1.6)
P 		23.5
(-3)
P 		35.8
(1.5)
P 		16
B 34.2
(-1.2)
P 		28.6
(-2.4)
P 		25.9
(-3)
P 		53.7
(3)
P 		28
C 43.6
(2.9)
P 		30.8
(-3)
P 		37.8
(0.2)
P 		43.9
(3)
P 		13
avr 39.2
(1) 		28.9
(-3) 		29.1
(-2.9) 		44.5
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 21.1
(-2.2)
P 		51.3
(3)
P 		36.8
(0.5)
P 		33.4
(-0.1)
P 		29.4
(-0.7)
P 		16.2
(-3)
A 		35
B 43.1
(1.7)
P 		35.2
(-0.7)
P 		27.5
(-3)
P 		35.9
(-0.5)
P 		47.4
(3)
P 		39.1
(0.5)
P 		20
C 49
(3)
P 		44.4
(2.1)
P 		38.2
(0.8)
P 		19
(-3)
P 		49.1
(3)
P 		22.7
(-2.3)
P 		30
avr 37.7
(1) 		43.6
(3) 		34.2
(-0.2) 		29.4
(-1.8) 		42
(2.5) 		26
(-3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188586_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15160
Sequence Type Exemplar sequence
Representative Public ID Y46H3D.5 NCBI
Target Description Y46H3D.5 /REP_DB=WormBase Gene ID /WP=CE27476 /GB=AAK72308.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071058(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071058 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-110) (nhr-110) mRNA, complete cds. 11/11 A 
GENEFINDER00000018933 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1622467:1624262:-1 11/11 None
Y46H3D.5.3 ENSEMBL cdna:known chromosome:CEL140:V:1622401:1624227:-1 gene:Y46H3D.5 11/11 None
Y46H3D.5.1 ENSEMBL cdna:known chromosome:CEL140:V:1622465:1624261:-1 gene:Y46H3D.5 11/11 None
Y46H3D.5.2 ENSEMBL cdna:known chromosome:CEL140:V:1622467:1624227:-1 gene:Y46H3D.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1622466-1624262(-) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Gene Symbol nhr-110
Ensembl Y46H3D.5
Entrez Gene 178651 Entrez gene
SwissProt Q966B9 EMBL-EBI
WormBase CE38005 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAO39199 nuclear receptor NHR-110 [Caenorhabditis elegans] 0.0
blast NP_503459 Nuclear Hormone Receptor family member (nhr-110) [Caenorhabditis elegans] gb|AAK72308.3| Nuclear hormone receptor family protein 110 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 2.5E-8
Sequence
Target Sequence 
>C. ELEGANS:188586_S_AT
tatttgatgtctgttgtatgccttcagagaatttcaagttttcatgaaaaacagttcctt
gcaattaaaagaaatatttttgaaggcaaacgatatggcggcttaattcaagaagaaatg
gaacaatttcaagacattttgtcaaacgacctacatgaatattacatcaataacaagatg
ccaaaatacctattgcgaatcaaacagctgatgcgagtgaaggaaatgtttttgagaaat
ttgaacattcgaatggaaaagtacaagattgcaggggtcttcaatgttttcaaccgtcca
atttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTTGATGTCTGTTGTATGCCTTC 67 663 1006 Antisense
GGCAAACGATATGGCGGCTTAATTC 392 533 1090 Antisense
GATATGGCGGCTTAATTCAAGAAGA 267 425 1097 Antisense
GACATTTTGTCAAACGACCTACATG 30 371 1138 Antisense
GATGCCAAAATACCTATTGCGAATC 101 43 1182 Antisense
TACCTATTGCGAATCAAACAGCTGA 592 649 1192 Antisense
CAAACAGCTGATGCGAGTGAAGGAA 539 189 1206 Antisense
AAGTACAAGATTGCAGGGGTCTTCA 650 155 1264 Antisense
TGCAGGGGTCTTCAATGTTTTCAAC 635 575 1275 Antisense
GGTCTTCAATGTTTTCAACCGTCCA 570 503 1281 Antisense
CAATGTTTTCAACCGTCCAATTTCT 628 179 1287 Antisense
Sequence Source Affymetrix Proprietary Database