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[188585_at] zinc finger protein

Description Y46H3D.5 /REP_DB=WormBase Gene ID /WP=CE27476 /GB=AAK72308.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_total > 12      4grp_total > 17      6grp_cgc > 43      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 73
(-2)
P 		82.8
(-0.1)
P 		99.1
(3)
P 		67.8
(-3)
P 		31
B 64.7
(-3)
P 		69.2
(-2.5)
P 		64.8
(-3)
P 		124.1
(3)
P 		59
C 52.3
(-3)
P 		99.1
(-0)
P 		62.2
(-2.4)
P 		146.9
(3)
P 		95
avr 63.3
(-3) 		83.7
(-0.5) 		75.4
(-1.5) 		112.9
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 75.7
(2.6)
A 		80
(3)
P 		32.1
(-1.7)
P 		73.8
(2.4)
P 		27
(-2.2)
A 		18.7
(-3)
A 		61
B 54.8
(0.1)
M 		88.1
(2.5)
P 		94.5
(3)
P 		13.1
(-3)
A 		38.8
(-1.1)
A 		66
(0.9)
A 		81
C 92
(0.4)
P 		146.3
(3)
P 		90.2
(0.3)
M 		72.6
(-0.5)
A 		30
(-2.6)
A 		21.4
(-3)
A 		125
avr 74.2
(0.5) 		104.8
(3) 		72.3
(0.3) 		53.2
(-1.2) 		31.9
(-3) 		35.4
(-2.7) 		73
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 26.6
(3)
P 		18
(-0.1)
P 		25.9
(2.7)
P 		9.9
(-3)
P 		17
B 20.6
(-0.1)
P 		17.1
(-1.9)
P 		15
(-3)
P 		26.4
(3)
P 		11
C 17.3
(-3)
P 		28.5
(3)
P 		21.7
(-0.6)
P 		24.8
(1)
P 		11
avr 21.5
(3) 		21.2
(1.4) 		20.9
(-0.3) 		20.4
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 13.9
(-0.6)
A 		28.4
(3)
P 		7
(-2.4)
P 		18.7
(0.6)
P 		8.1
(-2.1)
A 		4.5
(-3)
A 		24
B 19.1
(0.6)
M 		29.3
(3)
P 		22.9
(1.5)
P 		3.5
(-3)
A 		15.8
(-0.1)
A 		24.6
(1.9)
A 		26
C 34.1
(1.3)
P 		44.6
(3)
P 		23
(-0.5)
M 		14.6
(-1.8)
A 		9.7
(-2.6)
A 		7.2
(-3)
A 		37
avr 22.4
(-0.1) 		34.1
(3) 		17.6
(-1.3) 		12.3
(-2.7) 		11.2
(-3) 		12.1
(-2.8) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188585_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15160
Sequence Type Exemplar sequence
Representative Public ID Y46H3D.5 NCBI
Target Description Y46H3D.5 /REP_DB=WormBase Gene ID /WP=CE27476 /GB=AAK72308.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071058(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071058 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-110) (nhr-110) mRNA, complete cds. 11/11 A 
GENEFINDER00000018933 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1622467:1624262:-1 11/11 None
Y46H3D.5.3 ENSEMBL cdna:known chromosome:CEL140:V:1622401:1624227:-1 gene:Y46H3D.5 11/11 None
Y46H3D.5.1 ENSEMBL cdna:known chromosome:CEL140:V:1622465:1624261:-1 gene:Y46H3D.5 11/11 None
Y46H3D.5.2 ENSEMBL cdna:known chromosome:CEL140:V:1622467:1624227:-1 gene:Y46H3D.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1622466-1624262(-) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Gene Symbol nhr-110
Ensembl Y46H3D.5
Entrez Gene 178651 Entrez gene
SwissProt Q966B9 EMBL-EBI
WormBase CE38005 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAO39199 nuclear receptor NHR-110 [Caenorhabditis elegans] 0.0
blast NP_503459 Nuclear Hormone Receptor family member (nhr-110) [Caenorhabditis elegans] gb|AAK72308.3| Nuclear hormone receptor family protein 110 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 2.5E-8
Sequence
Target Sequence 
>C. ELEGANS:188585_AT
atatggtgtatttggggacgtcttgaaggcatagtgatgacagcaaaaatgaggattata
ggaaaatgtgagaaagagcaattttttttgacatctgatacacttattgtctacgataat
ttctcatctgatctagattattgttctacatacccattcgaagaaatgaaatactttttc
attccccgtgaaatgttccacgaggatgttatatccgagttggtaaaggtacagccagat
gatgttgagaccacttatttgatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATGGTGTATTTGGGGACGTCTTG 385 21 751 Antisense
GGGGACGTCTTGAAGGCATAGTGAT 239 497 764 Antisense
AGAGCAATTTTTTTTGACATCTGAT 551 65 825 Antisense
CATCTGATACACTTATTGTCTACGA 625 211 842 Antisense
ATAATTTCTCATCTGATCTAGATTA 46 27 866 Antisense
GATTATTGTTCTACATACCCATTCG 23 429 886 Antisense
ATACTTTTTCATTCCCCGTGAAATG 488 23 921 Antisense
CATTCCCCGTGAAATGTTCCACGAG 535 215 930 Antisense
GTTCCACGAGGATGTTATATCCGAG 377 441 945 Antisense
CAGCCAGATGATGTTGAGACCACTT 326 203 982 Antisense
GATGTTGAGACCACTTATTTGATGT 707 409 991 Antisense
Sequence Source Affymetrix Proprietary Database