[Home] | [Total List]

[188583_at] Ank repeat

Description F25H2.3 /REP_DB=WormBase Gene ID /WP=CE09648 /TR=Q93567 /GB=CAB02092.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Ank repeat
Cluster 6grp_total > 35      4grp_total > 09      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 4.2
(-2.9)
A 		3.7
(-3)
A 		4.7
(-2.8)
A 		39
(3)
A 		35
B 0.6
(-3)
A 		4.6
(3)
A 		4.2
(2.4)
A 		2.1
(-0.8)
A 		4
C 2.8
(-2.9)
A 		1.8
(-3)
A 		10.3
(-2.2)
A 		62.6
(3)
A 		61
avr 2.5
(-3) 		3.4
(-2.8) 		6.4
(-2.3) 		34.6
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 28.7
(3)
A 		13.9
(-0.2)
A 		1.6
(-2.9)
A 		4.3
(-2.3)
A 		1.2
(-3)
A 		3.5
(-2.5)
A 		28
B 2
(-2.9)
A 		2.3
(-2.8)
A 		29.6
(3)
A 		2
(-2.9)
A 		1.3
(-3)
A 		9
(-1.4)
A 		28
C 1.1
(-3)
A 		33.6
(3)
A 		5
(-2.3)
A 		13.9
(-0.6)
A 		3.1
(-2.6)
A 		12.6
(-0.9)
A 		33
avr 10.6
(0.6) 		16.6
(3) 		12.1
(1.2) 		6.7
(-1) 		1.9
(-3) 		8.4
(-0.3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.5
(-2.1)
A 		0.8
(-3)
A 		1.2
(-2.5)
A 		5.7
(3)
A 		5
B 0.2
(-3)
A 		1.1
(3)
A 		1
(2.3)
A 		0.5
(-1)
A 		1
C 0.9
(-2.8)
A 		0.5
(-3)
A 		3.6
(-1.2)
A 		10.6
(3)
A 		10
avr 0.9
(-2.9) 		0.8
(-3) 		1.9
(-1.6) 		5.6
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 5.3
(3)
A 		5
(2.6)
A 		0.4
(-3)
A 		1.1
(-2.1)
A 		0.4
(-3)
A 		0.9
(-2.4)
A 		5
B 0.7
(-2.8)
A 		0.8
(-2.7)
A 		7.2
(3)
A 		0.5
(-3)
A 		0.5
(-3)
A 		3.4
(-0.4)
A 		7
C 0.4
(-3)
A 		10.3
(3)
A 		1.3
(-2.5)
A 		2.8
(-1.5)
A 		1
(-2.6)
A 		4.2
(-0.7)
A 		10
avr 2.1
(-1.1) 		5.4
(3) 		3
(-0) 		1.5
(-1.9) 		0.6
(-3) 		2.8
(-0.3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188583_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2280
Sequence Type Exemplar sequence
Representative Public ID F25H2.3 NCBI
Target Description F25H2.3 /REP_DB=WormBase Gene ID /WP=CE09648 /TR=Q93567 /GB=CAB02092.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Ank repeat
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060358(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060358 NCBI Caenorhabditis elegans F25H2.3 (F25H2.3) mRNA, complete cds. 11/11 None
GENEFINDER00000042634 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10555501:10557997:1 9/11 None
SNAP00000042616 ENSEMBL cdna:SNAP chromosome:CEL140:I:10556112:10557997:1 9/11 None
F25H2.3 ENSEMBL cdna:known chromosome:CEL140:I:10555818:10557730:1 gene:F25H2.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000039799 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10555748-10557661(+) 100.0 100.0
Public Domain and Genome References
Gene Title Ank repeat
Ensembl F25H2.3
Entrez Gene 184936 Entrez gene
SwissProt Q93567 EMBL-EBI
WormBase CE09648 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02092 Hypothetical protein F25H2.3 [Caenorhabditis elegans] ref|NP_492759.1| F25H2.3 [Caenorhabditis elegans] 1.0E-169
blast CAB02092 Hypothetical protein F25H2.3 [Caenorhabditis elegans] ref|NP_492759.1| F25H2.3 [Caenorhabditis elegans] 1.0E-109
blast CAB02092 Hypothetical protein F25H2.3 [Caenorhabditis elegans] ref|NP_492759.1| F25H2.3 [Caenorhabditis elegans] 7.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR002110 EMBL-EBI Ankyrin 0.011
Pfam IPR002110 EMBL-EBI Ankyrin 3.4
Pfam IPR002110 EMBL-EBI Ankyrin 0.011
Pfam IPR002110 EMBL-EBI Ankyrin 3.4
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000042634 2 10-32,39-61
Sequence
Target Sequence 
>C. ELEGANS:188583_AT
atacttgctcgagtacggcagtactgaatatgcaaccggaaaatgtcagaattctgttag
aagtcggagccaaccctgaagcaatttgtctttcaaatggaaatcgactaatccatgata
ttctaataatgatgatcggaaaagataataaaataattgatttccaaagtgatcgagaaa
cgattttgaagatgttccgtcttgcaatggatattggagttcggatggatttgatcaata
aaaaagtgaaaactggttgtgatctgttgaatattcttctgagaaatgatatgaaatgta
aagaaacaggacagctgaatacaatagggtctgataaaccggttagttttgtgaaatttg
cgaggatttttttcaacgcttatttttattttcagagcattcacttggcagaagaggttg
aagaaatgcagatgttggaagtcactgaaagcgattca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATACTTGCTCGAGTACGGCAGTACT 176 25 278 Antisense
ACGGCAGTACTGAATATGCAACCGG 265 93 292 Antisense
GTTAGAAGTCGGAGCCAACCCTGAA 297 437 333 Antisense
GCCAACCCTGAAGCAATTTGTCTTT 258 277 346 Antisense
GAAATCGACTAATCCATGATATTCT 464 361 377 Antisense
GAAGATGTTCCGTCTTGCAATGGAT 270 339 465 Antisense
GGATATTGGAGTTCGGATGGATTTG 605 509 486 Antisense
GGTTGTGATCTGTTGAATATTCTTC 443 507 532 Antisense
GCGAGGATTTTTTTCAACGCTTATT 197 291 637 Antisense
ATTTTCAGAGCATTCACTTGGCAGA 280 15 665 Antisense
GTTGGAAGTCACTGAAAGCGATTCA 136 435 711 Antisense
Sequence Source Affymetrix Proprietary Database