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[188582_s_at] chitinase

Description C08H9.14 /REP_DB=WormBase Gene ID /WP=CE02999 /TR=Q17840 /GB=CAA91153.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=chitinase
Cluster 6grp_total > 77      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 153
1 2 3 4 range
A 2.8
(-3)
A 		6.4
(-2.9)
A 		6.8
(-2.8)
A 		155.2
(3)
P 		152
B 4.7
(-2.9)
A 		3.4
(-3)
A 		8
(-2.8)
A 		143.6
(3)
P 		140
C 5.5
(-2.9)
A 		3.3
(-3)
A 		2.5
(-3)
A 		154.3
(3)
P 		152
avr 4.3
(-3) 		4.4
(-3) 		5.8
(-2.9) 		151
(3) 		147

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 5.6
(-3)
A 		25.9
(-1.6)
A 		29.8
(-1.3)
A 		56.5
(0.5)
A 		6.8
(-2.9)
A 		93.1
(3)
P 		88
B 7.5
(-2.8)
A 		46.8
(-1.2)
A 		15.5
(-2.5)
A 		3.6
(-3)
A 		77.9
(0.1)
P 		146.4
(3)
P 		143
C 5.2
(-3)
A 		13.9
(-2.6)
A 		27.3
(-2)
A 		36.5
(-1.6)
A 		10.4
(-2.8)
A 		143.7
(3)
P 		139
avr 6.1
(-3) 		28.9
(-1.9) 		24.2
(-2.1) 		32.2
(-1.7) 		31.7
(-1.7) 		127.7
(3) 		122
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 1
(-3)
A 		1.4
(-2.9)
A 		1.8
(-2.8)
A 		22.7
(3)
P 		22
B 1.5
(-2.9)
A 		0.8
(-3)
A 		1.8
(-2.8)
A 		30.6
(3)
P 		30
C 1.8
(-2.8)
A 		0.9
(-3)
A 		0.9
(-3)
A 		26
(3)
P 		25
avr 1.4
(-2.9) 		1
(-3) 		1.5
(-2.9) 		26.4
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 1
(-3)
A 		9.2
(-0.7)
A 		6.5
(-1.5)
A 		14.3
(0.7)
A 		2.1
(-2.7)
A 		22.7
(3)
P 		22
B 2.6
(-2.8)
A 		15.6
(-1.4)
A 		3.8
(-2.7)
A 		0.9
(-3)
A 		31.7
(0.4)
P 		54.6
(3)
P 		54
C 1.9
(-3)
A 		4.2
(-2.7)
A 		6.9
(-2.4)
A 		7.3
(-2.3)
A 		3.4
(-2.8)
A 		48.1
(3)
P 		46
avr 1.8
(-3) 		9.7
(-1.8) 		5.7
(-2.4) 		7.5
(-2.1) 		12.4
(-1.4) 		41.8
(3) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188582_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3144
Sequence Type Exemplar sequence
Representative Public ID C08H9.14 NCBI
Target Description C08H9.14 /REP_DB=WormBase Gene ID /WP=CE02999 /TR=Q17840 /GB=CAA91153.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=chitinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063731(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063731 NCBI Caenorhabditis elegans C08H9.14 (chitinase) mRNA, complete cds. 11/11 None
SNAP00000001375 ENSEMBL cdna:SNAP chromosome:CEL140:II:9871571:9874432:-1 11/11 None
GENEFINDER00000001389 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9871571:9872862:-1 11/11 None
C08H9.14 ENSEMBL cdna:known chromosome:CEL140:II:9871519:9872897:-1 gene:C08H9.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9871567-9872859(-) 100.0 100.0
Public Domain and Genome References
Gene Title chitinase
Ensembl C08H9.14
Entrez Gene 174541 Entrez gene
SwissProt Q17840 EMBL-EBI
WormBase CE02999 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91153 Hypothetical protein C08H9.14 [Caenorhabditis elegans] ref|NP_496132.1| C08H9.14 [Caenorhabditis elegans] 0.0
blast CAA91154 Hypothetical protein C08H9.6 [Caenorhabditis elegans] ref|NP_496133.1| C08H9.6 [Caenorhabditis elegans] 0.0
blast CAE67788 Hypothetical protein CBG13364 [Caenorhabditis briggsae] 9.0E-84
blast CAE67796 Hypothetical protein CBG13374 [Caenorhabditis briggsae] 1.0E-76
blast CAA91152 Hypothetical protein C08H9.13 [Caenorhabditis elegans] ref|NP_496131.1| C08H9.13 [Caenorhabditis elegans] 1.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 1.0E-79
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 4.5E-94
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 4.5E-94
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496132.1 1 7-29
C08H9.14 1 7-29
GENEFINDER00000001389 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:188582_S_AT
gttatcagtgttattgctccaagttcaagctcacactcggaatatccttacaagtggaca
gaaatcttggaaaatgttgattttatcaatgtgattacttttgaatatttctatgaagct
aacaagattggaccacattcccctctctatggtggctcgtttggaaacgtagacgataca
ttgaaatacttgatatgtcggaccagaacaccaaacaaattaaacatggtggtatcattc
aatggaatttactggggtaacactacacttccattcgacgataaaggtgtatggatcccg
gacgattcggcacaaggaccatactcgtacggatggaaacaattcgcacggatgtctcat
ggattcgaccaaaatgattttgaatggaatgaggaaacaagaaccccgtatatttggaaa
gcggatacacaacaatttttgacatttgaaaatgagaaaagtttgacagaaaagatgaac
tacgcagttgcacacaatattggaggagtagcaatgtacacgattgatgatgacgatgag
gaaaatactcttctcaatgttgtggtcacgaatcttccaagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTATCAGTGTTATTGCTCCAAGTT 525 447 586 Antisense
TCCAAGTTCAAGCTCACACTCGGAA 674 585 603 Antisense
AACAAGATTGGACCACATTCCCCTC 364 135 706 Antisense
CTCTCTATGGTGGCTCGTTTGGAAA 589 229 728 Antisense
GATATGTCGGACCAGAACACCAAAC 377 423 777 Antisense
TGGGGTAACACTACACTTCCATTCG 594 551 838 Antisense
GTATGGATCCCGGACGATTCGGCAC 422 453 874 Antisense
GATTCGGCACAAGGACCATACTCGT 242 431 889 Antisense
TTCGCACGGATGTCTCATGGATTCG 631 695 928 Antisense
ATACTCTTCTCAATGTTGTGGTCAC 129 25 1130 Antisense
GTTGTGGTCACGAATCTTCCAAGTT 233 437 1144 Antisense
Sequence Source Affymetrix Proprietary Database