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[188581_at] peptidase

Description C02G6.1 /REP_DB=WormBase Gene ID /WP=CE06755 /TR=Q17592 /GB=AAA98001.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=peptidase
Cluster 6grp_total > 61      4grp_total > 40      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 1.6
(-3)
A 		3.3
(-2.8)
A 		63
(3)
A 		5.7
(-2.6)
A 		61
B 6.4
(-2.2)
A 		19.1
(2.3)
A 		21
(3)
A 		4
(-3)
A 		17
C 3.1
(-3)
A 		10.3
(-1.9)
A 		27.8
(0.8)
A 		42.2
(3)
A 		39
avr 3.7
(-3) 		10.9
(-1.7) 		37.3
(3) 		17.3
(-0.6) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 8.2
(-3)
A 		95.9
(2.3)
P 		88.2
(1.8)
P 		108.4
(3)
P 		32.8
(-1.5)
A 		25.9
(-1.9)
A 		100
B 34.7
(-3)
A 		94.9
(3)
P 		90.9
(2.6)
P 		92.7
(2.8)
P 		55.1
(-1)
P 		38.1
(-2.7)
P 		60
C 9.1
(-3)
A 		113.6
(2.4)
P 		104.8
(1.9)
P 		126.2
(3)
P 		39.1
(-1.5)
P 		55.1
(-0.6)
P 		117
avr 17.3
(-3) 		101.5
(2.5) 		94.6
(2.1) 		109.1
(3) 		42.3
(-1.4) 		39.7
(-1.5) 		92
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 0.6
(-3)
A 		0.7
(-3)
A 		16.5
(3)
A 		0.8
(-2.9)
A 		16
B 2
(-1.4)
A 		4.7
(2.7)
A 		4.9
(3)
A 		0.9
(-3)
A 		4
C 1
(-3)
A 		2.9
(-1.7)
A 		9.7
(3)
A 		7.1
(1.2)
A 		9
avr 1.2
(-3) 		2.8
(-2) 		10.4
(3) 		2.9
(-1.9) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 1.5
(-3)
A 		34.1
(3)
P 		19.2
(0.3)
P 		27.5
(1.8)
P 		9.9
(-1.5)
A 		6.3
(-2.1)
A 		33
B 12.1
(-3)
A 		31.6
(3)
P 		22.1
(0.1)
P 		24.6
(0.8)
P 		22.4
(0.2)
P 		14.2
(-2.4)
P 		20
C 3.4
(-3)
A 		34.7
(3)
P 		26.7
(1.5)
P 		25.4
(1.2)
P 		12.7
(-1.2)
P 		18.5
(-0.1)
P 		31
avr 5.7
(-3) 		33.5
(3) 		22.7
(0.7) 		25.8
(1.3) 		15
(-1) 		13
(-1.4) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188581_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11260
Sequence Type Exemplar sequence
Representative Public ID C02G6.1 NCBI
Target Description C02G6.1 /REP_DB=WormBase Gene ID /WP=CE06755 /TR=Q17592 /GB=AAA98001.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=peptidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072131(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072131 NCBI Caenorhabditis elegans C02G6.1 (peptidase) mRNA, complete cds. 11/11 None
SNAP00000041302 ENSEMBL cdna:SNAP chromosome:CEL140:V:5878964:5882443:1 11/11 None
GENEFINDER00000041306 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5878964:5882443:1 11/11 None
C02G6.1 ENSEMBL cdna:known chromosome:CEL140:V:5878964:5882443:1 gene:C02G6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5878963-5882443(+) 100.0 100.0
Public Domain and Genome References
Gene Title peptidase
Ensembl C02G6.1
Entrez Gene 182127 Entrez gene
SwissProt Q17592 EMBL-EBI
WormBase CE06755 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4222 metalloendopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA98001 Hypothetical protein C02G6.1 [Caenorhabditis elegans] ref|NP_504532.1| C02G6.1 [Caenorhabditis elegans] 0.0
blast AAO12429 Hypothetical protein F44E7.4c [Caenorhabditis elegans] ref|NP_504514.2| F44E7.4c [Caenorhabditis elegans] 0.0
blast AAC25789 Hypothetical protein F44E7.4a [Caenorhabditis elegans] ref|NP_741543.1| F44E7.4a [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007863 EMBL-EBI Peptidase M16, C-terminal 1.3E-18
Pfam IPR007863 EMBL-EBI Peptidase M16, C-terminal 2.5E-21
Pfam IPR001431 EMBL-EBI Peptidase M16, insulinase-like 3.2E-56
Pfam IPR007863 EMBL-EBI Peptidase M16, C-terminal 1.0E-28
Pfam IPR007863 EMBL-EBI Peptidase M16, C-terminal 2.5E-21
Sequence
Target Sequence 
>C. ELEGANS:188581_AT
aattgcggagctgttgcactcaacatttttgtacaaggaccaaaaagcgttgactacgtt
cttgagcgcattgaagtatttttggagtctgtccgcaaagaaataattgagatgccacaa
gatgaatttgagaaaaaagtggccggaatgattgctcgactcgaagaaaaaccgaaaact
ttaagcaatagatttaaaagattttggtatcagattgagtgccggcagtacgattttgcc
cgcagagagaaagaagttaaagttctgaaatcaattggaaaagatgacgtcattgcactc
tttgataaaaaaattcgtaaaaatgctgtcgaacggcgcaagcttgttgtccttgtccac
ggaaaaattgatgaccaagaaactttgaatcgtattataaagaaaaacgtagaatctgga
aagaaagaaaaagaaattctcaatctggatcaactccgacaatctctaccagtttatgat
ctaccaaacgcagctatcgact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGCGGAGCTGTTGCACTCAACA 24 177 2398 Antisense
GTATTTTTGGAGTCTGTCCGCAAAG 614 453 2473 Antisense
AGTGGCCGGAATGATTGCTCGACTC 322 59 2535 Antisense
GTATCAGATTGAGTGCCGGCAGTAC 473 453 2604 Antisense
CCGGCAGTACGATTTTGCCCGCAGA 531 265 2619 Antisense
GATGACGTCATTGCACTCTTTGATA 656 411 2680 Antisense
AAATGCTGTCGAACGGCGCAAGCTT 477 349 2718 Antisense
TTGTTGTCCTTGTCCACGGAAAAAT 15 703 2741 Antisense
TTCTCAATCTGGATCAACTCCGACA 648 689 2834 Antisense
ACTCCGACAATCTCTACCAGTTTAT 189 87 2850 Antisense
GATCTACCAAACGCAGCTATCGACT 27 421 2875 Antisense
Sequence Source Affymetrix Proprietary Database