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[188580_at] chitinase

Description C08H9.10 /REP_DB=WormBase Gene ID /WP=CE02995 /TR=Q17834 /GB=CAA91147.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=chitinase
Cluster 6grp_total > 53      4grp_total > 58      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 27.5
(3)
A 		5.3
(-3)
A 		6.6
(-2.6)
A 		8.9
(-2)
A 		22
B 23
(-1.3)
A 		72.1
(3)
A 		57.4
(1.7)
A 		3.4
(-3)
A 		69
C 6.5
(-2.8)
A 		16.8
(-0.3)
A 		30.6
(3)
A 		5.8
(-3)
A 		25
avr 19
(0.1) 		31.4
(3) 		31.5
(3) 		6
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 5.4
(-2.7)
A 		6.3
(-2.6)
A 		38.5
(1.8)
A 		3
(-3)
A 		47.3
(3)
A 		4.6
(-2.8)
A 		44
B 34.2
(0.7)
A 		31.4
(0.4)
A 		53.5
(3)
A 		23.4
(-0.6)
A 		11.7
(-1.9)
A 		2.7
(-3)
A 		51
C 5.5
(-2.9)
A 		4.9
(-3)
A 		41
(2.1)
A 		47.7
(3)
A 		33
(0.9)
A 		33.6
(1)
A 		43
avr 15
(-2.7) 		14.2
(-2.9) 		44.3
(3) 		24.7
(-0.8) 		30.7
(0.3) 		13.6
(-3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 10
(3)
A 		1.1
(-3)
A 		1.7
(-2.6)
A 		1.3
(-2.9)
A 		9
B 7.3
(-0.7)
A 		17.8
(3)
A 		13.3
(1.4)
A 		0.7
(-3)
A 		17
C 2.2
(-2.3)
A 		4.8
(-0.6)
A 		10.6
(3)
A 		1
(-3)
A 		10
avr 6.5
(1.4) 		7.9
(2.5) 		8.5
(3) 		1
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1
(-2.9)
A 		2.3
(-2.3)
A 		8.4
(0.4)
A 		0.8
(-3)
A 		14.3
(3)
A 		1.1
(-2.9)
A 		14
B 11.9
(2.5)
A 		10.4
(1.7)
A 		13
(3)
A 		6.2
(-0.4)
A 		4.8
(-1.1)
A 		1
(-3)
A 		12
C 2
(-2.7)
A 		1.5
(-3)
A 		10.4
(2.5)
A 		9.6
(2)
A 		10.7
(2.7)
A 		11.2
(3)
A 		10
avr 5
(-2.4) 		4.7
(-2.7) 		10.6
(3) 		5.5
(-1.9) 		9.9
(2.3) 		4.4
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188580_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3325
Sequence Type Exemplar sequence
Representative Public ID C08H9.10 NCBI
Target Description C08H9.10 /REP_DB=WormBase Gene ID /WP=CE02995 /TR=Q17834 /GB=CAA91147.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=chitinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063724(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063724 NCBI Caenorhabditis elegans C08H9.10 (chitinase) mRNA, complete cds. 11/11 None
SNAP00000001367 ENSEMBL cdna:SNAP chromosome:CEL140:II:9853904:9854887:-1 11/11 None
GENEFINDER00000001390 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9852296:9866384:-1 9/11 None
C08H9.10 ENSEMBL cdna:known chromosome:CEL140:II:9853904:9855601:-1 gene:C08H9.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9853900-9855598(-) 100.0 100.0
Public Domain and Genome References
Gene Title chitinase
Ensembl C08H9.10
Entrez Gene 182434 Entrez gene
SwissProt Q17834 EMBL-EBI
WormBase CE02995 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91147 Hypothetical protein C08H9.10 [Caenorhabditis elegans] ref|NP_496125.1| C08H9.10 [Caenorhabditis elegans] 0.0
blast CAA91149 Hypothetical protein C08H9.12 [Caenorhabditis elegans] ref|NP_496126.1| C08H9.12 [Caenorhabditis elegans] 0.0
blast CAA91148 Hypothetical protein C08H9.11 [Caenorhabditis elegans] ref|NP_496127.1| C08H9.11 [Caenorhabditis elegans] 0.0
blast CAA91148 Hypothetical protein C08H9.11 [Caenorhabditis elegans] ref|NP_496127.1| C08H9.11 [Caenorhabditis elegans] 1.0E-174
Protein Domains
Database ID Description E-Value
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 1.9E-90
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 1.5E-10
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 1.4E-4
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 9.6E-62
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 4.9E-14
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 2.1E-18
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 6.4E-34
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 7.6E-22
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 1.9E-74
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 1.8E-93
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 5.0E-99
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496125.1 1 29-51
C08H9.10 1 29-51
GENEFINDER00000001390 7 42-64,253-275,594-616,859-881,1214-1236,1628-1650,2060-2082
Sequence
Target Sequence 
>C. ELEGANS:188580_AT
agactatgtgatcagtataattgtcaactgttacgacaaccagttatccaatttgatggg
tttttcaaagtttgtcgactttttcaatatttattcaatacattatcaatcaagacaagt
tggtccatcctcaccattgtatggaggaggaagtagaaacatcgatgagacaatgaagta
ttatatttgtagaactgggcagccaagtaaatttaatatgatggttttgtttcacggaac
attttggaaaggtgccgaattaccattacgcaatgattctgatgatatattcaaagacca
aaactcggcaaaaggaggatttgctgtacgttggagagagctacttcaacagaaatggga
catgagcaacattaaattccacaatttaacaaaaacctcatatatgtggattcctggttc
atccttgtttttgactttag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGACTATGTGATCAGTATAATTGTC 398 67 771 Antisense
AATTGTCAACTGTTACGACAACCAG 435 177 789 Antisense
ACGACAACCAGTTATCCAATTTGAT 620 91 803 Antisense
TGATGGGTTTTTCAAAGTTTGTCGA 74 497 824 Antisense
TATTCAATACATTATCAATCAAGAC 344 663 862 Antisense
TCAAGACAAGTTGGTCCATCCTCAC 212 631 880 Antisense
TGGTCCATCCTCACCATTGTATGGA 497 551 891 Antisense
GATGGTTTTGTTTCACGGAACATTT 304 407 990 Antisense
ATGTGGATTCCTGGTTCATCCTTGT 694 49 1174 Antisense
ATTCCTGGTTCATCCTTGTTTTTGA 524 7 1180 Antisense
GGTTCATCCTTGTTTTTGACTTTAG 501 505 1186 Antisense
Sequence Source Affymetrix Proprietary Database