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[188576_at] peptidase

Description C43G2.5 /REP_DB=WormBase Gene ID /WP=CE08694 /TR=Q94176 /GB=AAB09110.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=peptidase
Cluster 6grp_total > 80      4grp_total > 26      6grp_cgc > 95      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 30.9
(-3)
A 		87.4
(2.9)
M 		84.6
(2.6)
A 		88.5
(3)
A 		58
B 71
(3)
A 		68.1
(2.1)
A 		50.8
(-3)
A 		58.1
(-0.8)
A 		20
C 76.9
(1.8)
A 		69.2
(0.4)
A 		50.4
(-3)
A 		83.6
(3)
A 		33
avr 59.6
(-3) 		74.9
(2.4) 		61.9
(-2.2) 		76.7
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 69.2
(0.6)
A 		38.9
(-3)
A 		47.3
(-2)
A 		90
(3)
P 		53.5
(-1.3)
A 		72.7
(1)
A 		51
B 55.6
(-2.8)
A 		60
(-2)
A 		90.6
(3)
A 		68.4
(-0.6)
A 		54.1
(-3)
A 		57.8
(-2.4)
A 		37
C 42.5
(-1.7)
A 		88.8
(3)
A 		30.1
(-3)
A 		73.4
(1.4)
A 		31.4
(-2.9)
A 		76.2
(1.7)
A 		59
avr 55.8
(-1.2) 		62.6
(0.2) 		56
(-1.1) 		77.3
(3) 		46.3
(-3) 		68.9
(1.4) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 11.2
(-3)
A 		19
(1.3)
M 		22.1
(3)
A 		13
(-2)
A 		11
B 22.6
(3)
A 		16.8
(-0.2)
A 		11.8
(-3)
A 		12.4
(-2.7)
A 		11
C 25.5
(3)
A 		19.9
(0.1)
A 		17.6
(-1.2)
A 		14.1
(-3)
A 		11
avr 19.8
(3) 		18.6
(1.9) 		17.2
(0.6) 		13.2
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 12.7
(-1.8)
A 		13.8
(-1.3)
A 		10.3
(-3)
A 		22.8
(3)
P 		16.1
(-0.2)
A 		17.7
(0.6)
A 		13
B 19.4
(-1)
A 		20
(-0.1)
A 		22
(3)
A 		18.1
(-3)
A 		22
(3)
A 		21.6
(2.4)
A 		4
C 15.8
(-0.5)
A 		27.1
(3)
A 		7.7
(-3)
A 		14.8
(-0.8)
A 		10.2
(-2.2)
A 		25.5
(2.5)
A 		19
avr 16
(-1) 		20.3
(2.1) 		13.3
(-3) 		18.6
(0.8) 		16.1
(-1) 		21.6
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188576_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11050
Sequence Type Exemplar sequence
Representative Public ID C43G2.5 NCBI
Target Description C43G2.5 /REP_DB=WormBase Gene ID /WP=CE08694 /TR=Q94176 /GB=AAB09110.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=peptidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068598
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000004602 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6557415:6560482:1 None
NM_068598 NCBI Caenorhabditis elegans C43G2.5 (peptidase) mRNA, complete cds. None
GENEFINDER00000004612 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6556789:6560767:1 None
C43G2.5 ENSEMBL cdna:known chromosome:CEL140:IV:6557214:6560865:1 gene:C43G2.5 None
C43G2.4 ENSEMBL cdna:known chromosome:CEL140:IV:6560720:6565245:1 gene:C43G2.4 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6557219-6560871(+) 97.88 100.0
Public Domain and Genome References
Gene Title peptidase
Gene Symbol try-3
Ensembl C43G2.5
C43G2.4
Entrez Gene 183420 Entrez gene
SwissProt Q94176 EMBL-EBI
WormBase CE34751 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1625067_AT dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4263 chymotrypsin activity inferred from electronic annotation QuickGO AmiGO
4295 trypsin activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB09111 Hypothetical protein C43G2.4 [Caenorhabditis elegans] ref|NP_501000.2| C43G2.4 [Caenorhabditis elegans] sp|Q94175|YCEL_CAEEL Hypothetical protein C43G2.4 in chromosome IV 0.0
blast CAE61514 Hypothetical protein CBG05414 [Caenorhabditis briggsae] 0.0
blast AAB09110 Trypsin-like protease protein 3 [Caenorhabditis elegans] ref|NP_500999.3| C43G2.5 [Caenorhabditis elegans] 1.0E-176
blast AAB09110 Trypsin-like protease protein 3 [Caenorhabditis elegans] ref|NP_500999.3| C43G2.5 [Caenorhabditis elegans] 1.0E-148
blast CAE61515 Hypothetical protein CBG05415 [Caenorhabditis briggsae] 1.0E-123
blast AAB09110 Trypsin-like protease protein 3 [Caenorhabditis elegans] ref|NP_500999.3| C43G2.5 [Caenorhabditis elegans] 1.0E-121
blast CAE61515 Hypothetical protein CBG05415 [Caenorhabditis briggsae] 1.0E-115
blast CAE59969 Hypothetical protein CBG03460 [Caenorhabditis briggsae] 1.0E-111
Protein Domains
Database ID Description E-Value
Pfam IPR001254 EMBL-EBI Peptidase S1, chymotrypsin 3.5E-44
Pfam IPR000615 EMBL-EBI Bestrophin 1.0E-126
Pfam IPR001254 EMBL-EBI Peptidase S1, chymotrypsin 1.8E-32
Pfam IPR001254 EMBL-EBI Peptidase S1, chymotrypsin 3.5E-35
Trans Membrane
ID Number Of Domains Domain Boundaries
C43G2.4 4 24-46,74-93,229-251,261-283
Sequence
Target Sequence 
>C. ELEGANS:188576_AT
tggagttgtcattggttacgggttaactttgggagaagattcctctggtgaaccaaagct
tatcaatagccaaacccttcaaagtacttctgttccaattatttctgatgatgattgcgt
aaaaacgtggagatttttgtcattgttatccgtgaaaattaccggatatcaaatatgcgc
tggagcatatcttcatggaacggcaccgggtgactctggcggtcctttattaattcataa
aagtaatggagaatatgtacaaattggaattacaagttatggagctgatgggttagatgg
agttattgatcaagggaagtttccaggtcctatcattttgttggtttttttaaatgattt
tttaaattttcaaatgagtataactctgaaacctgaatttttggcaagaaaatcacccga
catctcgcgagtacattttgatggaatttcttacatcttgaaacatggcggtgtctacac
aagaatttccaagtatgttccatggattcaaggtgtaattggaaaaacatcaatgagaag
tagtgtcacttcatcatctcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAGTTGTCATTGGTTACGGGTTA 198 545 531 Antisense
GGGAGAAGATTCCTCTGGTGAACCA 43 495 561 Antisense
AGCCAAACCCTTCAAAGTACTTCTG 145 83 598 Antisense
AGTACTTCTGTTCCAATTATTTCTG 218 63 613 Antisense
TGCGCTGGAGCATATCTTCATGGAA 176 583 706 Antisense
CATGGAACGGCACCGGGTGACTCTG 535 205 724 Antisense
GACTCTGGCGGTCCTTTATTAATTC 453 371 742 Antisense
GGAAGTTTCCAGGTCCTATCATTTT 510 531 845 Antisense
GCAAGAAAATCACCCGACATCTCGC 361 319 934 Antisense
CCCGACATCTCGCGAGTACATTTTG 656 259 946 Antisense
AAGTAGTGTCACTTCATCATCTCCA 465 157 1068 Antisense
Sequence Source Affymetrix Proprietary Database